Package: TSAR 1.5.0
Xinlin Gao
TSAR: Thermal Shift Analysis in R
This package automates analysis workflow for Thermal Shift Analysis (TSA) data. Processing, analyzing, and visualizing data through both shiny applications and command lines. Package aims to simplify data analysis and offer front to end workflow, from raw data to multiple trial analysis.
Authors:
TSAR_1.5.0.tar.gz
TSAR_1.5.0.zip(r-4.5)TSAR_1.5.0.zip(r-4.4)TSAR_1.5.0.zip(r-4.3)
TSAR_1.5.0.tgz(r-4.5-any)TSAR_1.5.0.tgz(r-4.4-any)TSAR_1.5.0.tgz(r-4.3-any)
TSAR_1.5.0.tar.gz(r-4.5-noble)TSAR_1.5.0.tar.gz(r-4.4-noble)
TSAR_1.5.0.tgz(r-4.4-emscripten)TSAR_1.5.0.tgz(r-4.3-emscripten)
TSAR.pdf |TSAR.html✨
TSAR/json (API)
NEWS
| # Install 'TSAR' in R: |
| install.packages('TSAR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- example_tsar_data - Example tsar_data file
- qPCR_data1 - QPCR_data1 Dataset
- qPCR_data2 - QPCR_data2 Dataset
- well_information - Example well information Data
- well_information_template - Well Information Template
On BioConductor:TSAR-1.5.0(bioc 3.21)TSAR-1.4.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareshinyappsvisualizationqpcr
Last updated 4 months agofrom:c609932285. Checks:1 OK, 7 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 26 2025 |
| R-4.5-win | NOTE | Jan 26 2025 |
| R-4.5-mac | NOTE | Jan 26 2025 |
| R-4.5-linux | NOTE | Jan 26 2025 |
| R-4.4-win | NOTE | Jan 26 2025 |
| R-4.4-mac | NOTE | Jan 26 2025 |
| R-4.3-win | NOTE | Jan 26 2025 |
| R-4.3-mac | NOTE | Jan 26 2025 |
Exports:analyze_normcondition_IDsgam_analysisget_legendgraph_tsarjoin_well_infomerge_normmerge_TSAmodel_boltzmannmodel_fitmodel_gamnormalizenormalize_fluorescenceread_analysisread_raw_dataread_tsarremove_rawrescalerun_boltzmannscreenTm_differenceTm_estTSA_averageTSA_boxplotTSA_compare_plotTSA_ligandsTSA_proteinsTSA_TmsTSA_wells_plotview_derivview_modelweed_rawwell_IDswrite_tsar
Dependencies:abindaskpassbackportsbase64encbootbroombslibcachemcarcarDatacellrangerclicolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDerivdigestdoBydplyrevaluatefansifarverfastmapfontawesomeFormulafsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminpack.lmminqamodelrmunsellnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestpillarpkgconfigplotlypolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreadxlreformulasrematchrhandsontablerlangrmarkdownrstatixsassscalesshinyshinyjsshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyamlzip
Frequently Asked Questions
Rendered fromFAQ_assistance.Rmdusingknitr::rmarkdownon Jan 26 2025.Last update: 2024-04-06
Started: 2023-08-08
TSAR Package Structure
Rendered fromTSAR_Package_Structure.Rmdusingknitr::rmarkdownon Jan 26 2025.Last update: 2024-04-06
Started: 2023-06-23
TSAR Workflow by Command
Rendered fromTSAR_Workflow_by_Command.Rmdusingknitr::rmarkdownon Jan 26 2025.Last update: 2024-04-06
Started: 2023-07-05
TSAR Workflow by Shiny
Rendered fromTSAR_Workflow_by_Shiny.Rmdusingknitr::rmarkdownon Jan 26 2025.Last update: 2024-04-06
Started: 2023-07-05
