Package: TSAR 1.3.0

Xinlin Gao

TSAR: Thermal Shift Analysis in R

This package automates analysis workflow for Thermal Shift Analysis (TSA) data. Processing, analyzing, and visualizing data through both shiny applications and command lines. Package aims to simplify data analysis and offer front to end workflow, from raw data to multiple trial analysis.

Authors:Xinlin Gao [aut, cre], William M. McFadden [aut, fnd], Stefan G. Sarafianos [fnd, aut, ths]

TSAR_1.3.0.tar.gz
TSAR_1.3.0.zip(r-4.5)TSAR_1.3.0.zip(r-4.4)TSAR_1.3.0.zip(r-4.3)
TSAR_1.3.0.tgz(r-4.4-any)TSAR_1.3.0.tgz(r-4.3-any)
TSAR_1.3.0.tar.gz(r-4.5-noble)TSAR_1.3.0.tar.gz(r-4.4-noble)
TSAR_1.3.0.tgz(r-4.4-emscripten)TSAR_1.3.0.tgz(r-4.3-emscripten)
TSAR.pdf |TSAR.html✨
TSAR/json (API)
NEWS

Peer review:

On BioConductor:TSAR-1.3.0(bioc 3.20)TSAR-1.2.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

34 exports 1.64 score 116 dependencies

Last updated 2 months agofrom:dfc1f3d5da

Exports:analyze_normcondition_IDsgam_analysisget_legendgraph_tsarjoin_well_infomerge_normmerge_TSAmodel_boltzmannmodel_fitmodel_gamnormalizenormalize_fluorescenceread_analysisread_raw_dataread_tsarremove_rawrescalerun_boltzmannscreenTm_differenceTm_estTSA_averageTSA_boxplotTSA_compare_plotTSA_ligandsTSA_proteinsTSA_TmsTSA_wells_plotview_derivview_modelweed_rawwell_IDswrite_tsar

Dependencies:abindanytimeaskpassbackportsbase64encBHbootbroombslibcachemcarcarDatacellrangerclicolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmimeminpack.lmminqamunsellnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestpillarpkgconfigplotlypolynomprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadxlrematchrhandsontablerlangrmarkdownrstatixsassscalesshinyshinyjsshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyamlzip