Package: TRESS 1.11.0
TRESS: Toolbox for mRNA epigenetics sequencing analysis
This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.
Authors:
TRESS_1.11.0.tar.gz
TRESS_1.11.0.zip(r-4.5)TRESS_1.11.0.zip(r-4.4)TRESS_1.11.0.zip(r-4.3)
TRESS_1.11.0.tgz(r-4.4-any)TRESS_1.11.0.tgz(r-4.3-any)
TRESS_1.11.0.tar.gz(r-4.5-noble)TRESS_1.11.0.tar.gz(r-4.4-noble)
TRESS_1.11.0.tgz(r-4.4-emscripten)TRESS_1.11.0.tgz(r-4.3-emscripten)
TRESS.pdf |TRESS.html✨
TRESS/json (API)
NEWS
# Install 'TRESS' in R: |
install.packages('TRESS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Basal - Bin-level and region-level data from basal mouse brain samples
- DMR_M3vsWT - Transcriptome location and read counts of 200 candidate DMRs, and size factors.
- DMR_SixWeekvsTwoWeek - Transcriptome location and read counts of 200 candidate DMRs.
On BioConductor:TRESS-1.11.0(bioc 3.20)TRESS-1.10.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:a4dd67a245
Exports:CallCandidatesCallDMRs.paramEstiCallPeaks.multiRepCallPeaks.oneRepCallPeaks.paramEstiCoefNameDivideBinsDMRInferfilterRegionsfindBumpsmeRatioShowOnePeakTRESS_DMRfitTRESS_DMRtestTRESS_peak
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsvctrsXMLXVectoryamlzlibbioc