Package: TEQC 4.27.0
Sarah Bonnin
TEQC: Quality control for target capture experiments
Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.
Authors:
TEQC_4.27.0.tar.gz
TEQC_4.27.0.zip(r-4.5)TEQC_4.27.0.zip(r-4.4)TEQC_4.27.0.zip(r-4.3)
TEQC_4.27.0.tgz(r-4.4-any)TEQC_4.27.0.tgz(r-4.3-any)
TEQC_4.27.0.tar.gz(r-4.5-noble)TEQC_4.27.0.tar.gz(r-4.4-noble)
TEQC_4.27.0.tgz(r-4.4-emscripten)TEQC_4.27.0.tgz(r-4.3-emscripten)
TEQC.pdf |TEQC.html✨
TEQC/json (API)
NEWS
| # Install 'TEQC' in R: |
| install.packages('TEQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:TEQC-4.27.0(bioc 3.20)TEQC-4.26.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:657430222b
Exports:chrom.barplotcoverage.correlationcoverage.densitycoverage.GCcoverage.histcoverage.plotcoverage.targetcoverage.targetlength.plotcoverage.uniformitycovered.kduplicates.barplotfraction.reads.targetfraction.targetget.baitsget.readsget.targetsinsert.size.histmake.wigfilesmultiTEQCreportreads2pairsreadsPerTargetTEQCreport
Dependencies:askpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopscodetoolscpp11crayoncurlformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrhwriterIRangesjsonlitelambda.rmimeopensslR6RhtslibRsamtoolsS4VectorssnowsysUCSC.utilsXVectorzlibbioc
