Package: Statial 1.15.0

Farhan Ameen

Statial: A package to identify changes in cell state relative to spatial associations

Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.

Authors:Farhan Ameen [aut, cre], Sourish Iyengar [aut], Alex Qin [aut], Shila Ghazanfar [aut], Ellis Patrick [aut]

Statial_1.15.0.tar.gz
Statial_1.15.0.zip(r-4.7)Statial_1.15.0.zip(r-4.6)Statial_1.15.0.zip(r-4.5)
Statial_1.15.0.tgz(r-4.6-any)Statial_1.15.0.tgz(r-4.5-any)
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Statial_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Statial/json (API)

# Install 'Statial' in R:
install.packages('Statial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sydneybiox/statial/issues

Pkgdown/docs site:https://sydneybiox.github.io

Datasets:

On BioConductor:Statial-1.15.0(bioc 3.24)Statial-1.14.0(bioc 3.23)

singlecellspatialclassificationsingle-cell

6.77 score 6 stars 31 scripts 402 downloads 16 exports 225 dependencies

Last updated from:97ee04a497. Checks:1 WARNING, 2 OK, 5 ERROR, 1 NOTE. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING267
source / vignettesOK720
linux-release-x86_64ERROR437
macos-release-arm64ERROR275
macos-oldrel-arm64NOTE726
windows-develERROR1001
windows-releaseERROR794
windows-oldrelERROR856
wasm-releaseOK251

Exports:calcContaminationcalcStateChangesgetAbundancesgetDistancesgetMarkerMeansgetParentPhyloisKontextualkontextCurvekontextPlotKontextualmakeWindowparentCombinationsplotStateChangesprepMatrixrelabelrelabelKontextual

Dependencies:abindALLapeaplotaskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsbiocmakeBiocParallelbitbit64blobbootbroombslibcachemcarcarDatacirclizeclassclassIntcliclueclustercodetoolscolorRampscolorspaceComplexHeatmapconcavemanConsensusClusterPluscorrplotcowplotcpp11crayoncrosstalkcurlcytolibdata.tableDBIdbplyrDelayedArraydeldirDerivdiffcytdigestdir.expirydoBydoParalleldplyre1071edgeRevaluatefarverfastmapfilelockflowCoreFlowSOMfontawesomefontBitstreamVerafontLiberationfontquiverforeachforecastformatRFormulafracdifffsfutile.loggerfutile.optionsgdtoolsgenericsGenomicRangesGetoptLongggforceggfunggiraphggnewscaleggplot2ggplotifyggpubrggrepelggsciggsignifggtreeGlobalOptionsgluegoftestgridExtragridGraphicsgtablehighrhopachhtmltoolshtmlwidgetshttrhttr2igraphIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lmtestlocfitmagickmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivopensslotelpatchworkpbkrtestpillarpkgconfigplotlyplyrpngpolyclippolynompromisesproxypurrrquantregR6rangerrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2Rhdf5librjsonrlangrmarkdownRProtoBufLibRSQLiterstatixRtsnes2S4ArraysS4VectorsS7sandwichsassscalesSeqinfosfshapeSingleCellExperimentsnowSparseArraySparseMSpatialExperimentspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstensorTH.datatibbletidyrtidyselecttidytreetimeDatetinytextreeiotreekoRtweenrunitsurcautf8V8vctrsviridisLitewithrwkxfunXMLXVectoryamlyulab.utilszoo

Statial

Farhan Ameen, Sourish Iyengar, Alex Qin, Ellis Patrick

Rendered fromStatial.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-07-07
Started: 2022-09-18