Package: Statial 1.15.8

Farhan Ameen

Statial: A package to identify changes in cell state relative to spatial associations

Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.

Authors:Farhan Ameen [aut, cre], Sourish Iyengar [aut], Alex Qin [aut], Shila Ghazanfar [aut], Ellis Patrick [aut]

Statial_1.15.8.tar.gz
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Statial_1.15.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Statial/json (API)

# Install 'Statial' in R:
install.packages('Statial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sydneybiox/statial/issues

Pkgdown/docs site:https://sydneybiox.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On BioConductor:Statial-1.15.3(bioc 3.24)Statial-1.14.0(bioc 3.23)

singlecellspatialclassificationsingle-cellcpp

6.12 score 7 stars 42 scripts 474 downloads 17 exports 90 dependencies

Last updated from:b164291790. Checks:1 WARNING, 14 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING243
linux-devel-arm64ERROR206
linux-devel-x86_64ERROR261
source / vignettesERROR741
linux-release-arm64ERROR244
linux-release-x86_64ERROR284
macos-release-arm64ERROR164
macos-release-x86_64ERROR539
macos-oldrel-arm64ERROR124
macos-oldrel-x86_64ERROR467
windows-devel-arm64ERROR252
windows-devel-x86_64ERROR163
windows-release-arm64ERROR246
windows-release-x86_64ERROR182
windows-oldrel-x86_64ERROR136
wasm-releaseOK212

Exports:calcContaminationcalcStateChangesgetAbundancesgetDistancesgetMarkerMeansgetParentPhyloisKontextualkontextCurvekontextPlotKontextualkontextualTestmakeWindowparentCombinationsplotStateChangesprepMatrixrelabelrelabelKontextual

Dependencies:abindaskpassBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemclicodetoolscpp11curldata.tableDBIdbplyrDelayedArraydeldirdplyredgeRfarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehttr2IRangesisobandlabelinglambda.rlatticelifecyclelimmalocfitmagickmagrittrMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpolyclippurrrR6rangerRColorBrewerRcppRcppEigenRhpcBLASctlrjsonrlangRSQLiteS4ArraysS4VectorsS7scalesSeqinfoSingleCellExperimentsnowSparseArraySpatialExperimentspatstat.dataspatstat.geomspatstat.univarspatstat.utilsspicyRstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselectutf8vctrsviridisLitewithrXVector