Package: SpatialCPie 1.23.0
Joseph Bergenstraahle
SpatialCPie: Cluster analysis of Spatial Transcriptomics data
SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.
Authors:
SpatialCPie_1.23.0.tar.gz
SpatialCPie_1.23.0.zip(r-4.5)SpatialCPie_1.23.0.zip(r-4.4)SpatialCPie_1.23.0.zip(r-4.3)
SpatialCPie_1.23.0.tgz(r-4.5-any)SpatialCPie_1.23.0.tgz(r-4.4-any)SpatialCPie_1.23.0.tgz(r-4.3-any)
SpatialCPie_1.23.0.tar.gz(r-4.5-noble)SpatialCPie_1.23.0.tar.gz(r-4.4-noble)
SpatialCPie_1.23.0.tgz(r-4.4-emscripten)SpatialCPie_1.23.0.tgz(r-4.3-emscripten)
SpatialCPie.pdf |SpatialCPie.html✨
SpatialCPie/json (API)
NEWS
| # Install 'SpatialCPie' in R: |
| install.packages('SpatialCPie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:SpatialCPie-1.23.0(bioc 3.21)SpatialCPie-1.22.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
transcriptomicsclusteringrnaseqsoftware
Last updated 4 months agofrom:8f8ad85770. Checks:3 OK, 4 NOTE, 1 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 16 2025 |
| R-4.5-win | NOTE | Feb 16 2025 |
| R-4.5-mac | WARNING | Feb 16 2025 |
| R-4.5-linux | NOTE | Feb 16 2025 |
| R-4.4-win | NOTE | Feb 16 2025 |
| R-4.4-mac | NOTE | Feb 16 2025 |
| R-4.3-win | OK | Feb 16 2025 |
| R-4.3-mac | OK | Feb 16 2025 |
Exports:parseSpotFilerunCPie
Dependencies:abindaskpassbase64encBiobaseBiocGenericsbitbit64bslibcachemclicliprcolorspacecommonmarkcpp11crayoncurldata.tableDelayedArraydigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggforceggiraphggplot2ggrepelgluegtablehighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclelpSolvemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpolyclipprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppEigenreadrrlangrmarkdownS4ArraysS4VectorssassscalesshinyshinycssloadersshinyjsshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimentsyssystemfontstibbletidyrtidyselecttinytextweenrtzdbUCSC.utilsutf8uuidvctrsviridisLitevroomwithrxfunxtableXVectoryamlzeallot
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| SpatialCPie: Cluster analysis of Spatial Transcriptomics data | SpatialCPie-package SpatialCPie |
| Parse spot detector output | parseSpotFile |
| Run SpatialCPie | runCPie |
