Package: SigFuge 1.45.0

Patrick Kimes

SigFuge: SigFuge

Algorithm for testing significance of clustering in RNA-seq data.

Authors:Patrick Kimes, Christopher Cabanski

SigFuge_1.45.0.tar.gz
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SigFuge.pdf |SigFuge.html✨
SigFuge/json (API)

# Install 'SigFuge' in R:
install.packages('SigFuge', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • geneAnnot - CDKN2A gene locus annotation
  • geneDepth - Coverage matrix across CDKN2A gene locus

On BioConductor:SigFuge-1.45.0(bioc 3.21)SigFuge-1.44.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clusteringvisualizationrnaseqimmunooncology

3.30 score 3 scripts 251 downloads 1 mentions 4 exports 49 dependencies

Last updated 4 months agofrom:3cd33ce6cc. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 30 2025
R-4.5-winNOTEJan 30 2025
R-4.5-macNOTEJan 30 2025
R-4.5-linuxNOTEJan 30 2025
R-4.4-winNOTEJan 30 2025
R-4.4-macNOTEJan 30 2025
R-4.3-winNOTEJan 30 2025
R-4.3-macNOTEJan 30 2025

Exports:SFfigureSFlabelsSFnormalizeSFpval

Dependencies:askpassBiocGenericsclicolorspacecurlfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSmatlabMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppreshaperlangS4VectorsscalessigclustsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVector

SigFuge Tutorial

Rendered fromSigFuge.Rnwusingutils::Sweaveon Jan 30 2025.

Last update: 2014-09-22
Started: 2013-11-01