Package: SigFuge 1.45.0
Patrick Kimes
SigFuge: SigFuge
Algorithm for testing significance of clustering in RNA-seq data.
Authors:
SigFuge_1.45.0.tar.gz
SigFuge_1.45.0.zip(r-4.5)SigFuge_1.45.0.zip(r-4.4)SigFuge_1.45.0.zip(r-4.3)
SigFuge_1.45.0.tgz(r-4.4-any)SigFuge_1.45.0.tgz(r-4.3-any)
SigFuge_1.45.0.tar.gz(r-4.5-noble)SigFuge_1.45.0.tar.gz(r-4.4-noble)
SigFuge_1.45.0.tgz(r-4.4-emscripten)SigFuge_1.45.0.tgz(r-4.3-emscripten)
SigFuge.pdf |SigFuge.html✨
SigFuge/json (API)
| # Install 'SigFuge' in R: |
| install.packages('SigFuge', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:SigFuge-1.45.0(bioc 3.21)SigFuge-1.44.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
clusteringvisualizationrnaseqimmunooncology
Last updated 2 months agofrom:3cd33ce6cc. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 01 2024 |
| R-4.5-win | NOTE | Dec 01 2024 |
| R-4.5-linux | NOTE | Dec 01 2024 |
| R-4.4-win | NOTE | Dec 01 2024 |
| R-4.4-mac | NOTE | Dec 01 2024 |
| R-4.3-win | NOTE | Dec 01 2024 |
| R-4.3-mac | NOTE | Dec 01 2024 |
Exports:SFfigureSFlabelsSFnormalizeSFpval
Dependencies:askpassBiocGenericsclicolorspacecurlfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSmatlabMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppreshaperlangS4VectorsscalessigclustsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| SigFuge | SigFuge-package SigFuge |
| CDKN2A gene locus annotation | geneAnnot |
| Coverage matrix across CDKN2A gene locus | geneDepth |
| Plot expression as curves | SFfigure |
| Calculate SigFuge labels | SFlabels |
| SigFuge normalize read counts | SFnormalize |
| Calculate SigFuge p-value | SFpval |
