Package: SeqSQC 1.27.0
SeqSQC: A bioconductor package for sample quality check with next generation sequencing data
The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.
Authors:
SeqSQC_1.27.0.tar.gz
SeqSQC_1.27.0.zip(r-4.5)SeqSQC_1.27.0.zip(r-4.4)SeqSQC_1.27.0.zip(r-4.3)
SeqSQC_1.27.0.tgz(r-4.4-any)SeqSQC_1.27.0.tgz(r-4.3-any)
SeqSQC_1.27.0.tar.gz(r-4.5-noble)SeqSQC_1.27.0.tar.gz(r-4.4-noble)
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SeqSQC.pdf |SeqSQC.html✨
SeqSQC/json (API)
NEWS
# Install 'SeqSQC' in R: |
install.packages('SeqSQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/liubuntu/seqsqc/issues
On BioConductor:SeqSQC-1.27.0(bioc 3.20)SeqSQC-1.26.0(bioc 3.19)
Last updated 2 months agofrom:06f6f254fd
Exports:gdsfilegdsfile<-IBDCheckIBDRemoveInbreedingLoadVfileMissingRatePCACheckplotQCproblemListQCresultQCresult<-RenderReportsampleQCSeqOpenSeqSQCSexCheck
Dependencies:AnnotationDbiAnnotationHubaskpassbackportsbase64encBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbroombroom.helpersbslibcachemclassclicliprcolorspacecpp11crayoncrosstalkcurldata.tableDBIdbplyrdigestdplyre1071evaluateExperimentHubfansifarverfastmapfilelockfontawesomeforcatsfsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGGallyggplot2ggstatsgluegtablehavenhighrhmshtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglabelledlaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrplotlyplyrpngprettyunitsprogresspromisesproxypurrrR6rappdirsRColorBrewerRcppreadrreshape2rlangrmarkdownRSQLiteS4VectorssassscalesSNPRelatestringistringrsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXVectoryamlzlibbioc