Overview and Background | Installation and Requirements | Calculating information accretion values | Getting Started with RU-MI Calculations | Creating a RU-MI Curve | Additional metrics | Acknowledgments
Package: SemDist 1.47.0
Ian Gonzalez
SemDist: Information Accretion-based Function Predictor Evaluation
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
Authors:
SemDist_1.47.0.tar.gz
SemDist_1.47.0.zip(r-4.7)SemDist_1.47.0.zip(r-4.6)SemDist_1.47.0.zip(r-4.5)
SemDist_1.47.0.tgz(r-4.6-any)SemDist_1.47.0.tgz(r-4.5-any)
SemDist_1.47.0.tar.gz(r-4.7-any)SemDist_1.47.0.tar.gz(r-4.6-any)
SemDist_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SemDist/json (API)
| # Install 'SemDist' in R: |
| install.packages('SemDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/iangonzalez/semdist/issues
Datasets:
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
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- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- parentcnt - Parent Count Data
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- termcnt - Term Count Data
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On BioConductor:SemDist-1.47.0(bioc 3.24)SemDist-1.46.0(bioc 3.23)
classificationannotationgosoftware
Last updated from:12072a46a9. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 213 | ||
| linux-devel-x86_64 | NOTE | 335 | ||
| source / vignettes | OK | 206 | ||
| linux-release-x86_64 | NOTE | 238 | ||
| macos-release-arm64 | NOTE | 182 | ||
| macos-oldrel-arm64 | NOTE | 129 | ||
| windows-devel | NOTE | 222 | ||
| windows-release | NOTE | 183 | ||
| windows-oldrel | NOTE | 177 | ||
| wasm-release | OK | 138 |
Exports:computeIAfindRUMIRUMIcurve
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute information accretion for an ontology | computeIA |
| Information accretion based predictor assessment | findRUMI |
| Information Accretion Data | IAccr |
| Parent Count Data | parentcnt |
| Information accretion based predictor assessment (across many thresholds) | RUMIcurve |
| Term Count Data | termcnt |
