Package: SemDist 1.39.0
Ian Gonzalez
SemDist: Information Accretion-based Function Predictor Evaluation
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
Authors:
SemDist_1.39.0.tar.gz
SemDist_1.39.0.zip(r-4.5)SemDist_1.39.0.zip(r-4.4)SemDist_1.39.0.zip(r-4.3)
SemDist_1.39.0.tgz(r-4.4-any)SemDist_1.39.0.tgz(r-4.3-any)
SemDist_1.39.0.tar.gz(r-4.5-noble)SemDist_1.39.0.tar.gz(r-4.4-noble)
SemDist_1.39.0.tgz(r-4.4-emscripten)SemDist_1.39.0.tgz(r-4.3-emscripten)
SemDist.pdf |SemDist.html✨
SemDist/json (API)
NEWS
| # Install 'SemDist' in R: |
| install.packages('SemDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/iangonzalez/semdist/issues
Datasets:
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- parentcnt - Parent Count Data
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- termcnt - Term Count Data
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On BioConductor:SemDist-1.39.0(bioc 3.20)SemDist-1.38.0(bioc 3.19)
Last updated 2 months agofrom:0577e29523
Exports:computeIAfindRUMIRUMIcurve
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDataglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute information accretion for an ontology | computeIA |
| Information accretion based predictor assessment | findRUMI |
| Information Accretion Data | IAccr |
| Parent Count Data | parentcnt |
| Information accretion based predictor assessment (across many thresholds) | RUMIcurve |
| Term Count Data | termcnt |
