Package: SemDist 1.41.0
Ian Gonzalez
SemDist: Information Accretion-based Function Predictor Evaluation
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
Authors:
SemDist_1.41.0.tar.gz
SemDist_1.41.0.zip(r-4.5)SemDist_1.41.0.zip(r-4.4)SemDist_1.41.0.zip(r-4.3)
SemDist_1.41.0.tgz(r-4.4-any)SemDist_1.41.0.tgz(r-4.3-any)
SemDist_1.41.0.tar.gz(r-4.5-noble)SemDist_1.41.0.tar.gz(r-4.4-noble)
SemDist_1.41.0.tgz(r-4.4-emscripten)SemDist_1.41.0.tgz(r-4.3-emscripten)
SemDist.pdf |SemDist.html✨
SemDist/json (API)
NEWS
| # Install 'SemDist' in R: |
| install.packages('SemDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/iangonzalez/semdist/issues
Datasets:
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- IAccr - Information Accretion Data
- parentcnt - Parent Count Data
- parentcnt - Parent Count Data
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- termcnt - Term Count Data
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On BioConductor:SemDist-1.41.0(bioc 3.21)SemDist-1.40.0(bioc 3.20)
classificationannotationgosoftware
Last updated 2 months agofrom:062d1fae43. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-win | NOTE | Dec 19 2024 |
| R-4.5-linux | NOTE | Dec 19 2024 |
| R-4.4-win | NOTE | Dec 19 2024 |
| R-4.4-mac | NOTE | Dec 19 2024 |
| R-4.3-win | NOTE | Dec 19 2024 |
| R-4.3-mac | NOTE | Dec 19 2024 |
Exports:computeIAfindRUMIRUMIcurve
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDataglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute information accretion for an ontology | computeIA |
| Information accretion based predictor assessment | findRUMI |
| Information Accretion Data | IAccr |
| Parent Count Data | parentcnt |
| Information accretion based predictor assessment (across many thresholds) | RUMIcurve |
| Term Count Data | termcnt |
