Package: SQLDataFrame 1.19.0
SQLDataFrame: Representation of SQL tables in DataFrame metaphor
Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.
Authors:
SQLDataFrame_1.19.0.tar.gz
SQLDataFrame_1.19.0.zip(r-4.5)SQLDataFrame_1.19.0.zip(r-4.4)SQLDataFrame_1.19.0.zip(r-4.3)
SQLDataFrame_1.19.0.tgz(r-4.4-any)SQLDataFrame_1.19.0.tgz(r-4.3-any)
SQLDataFrame_1.19.0.tar.gz(r-4.5-noble)SQLDataFrame_1.19.0.tar.gz(r-4.4-noble)
SQLDataFrame_1.19.0.tgz(r-4.4-emscripten)SQLDataFrame_1.19.0.tgz(r-4.3-emscripten)
SQLDataFrame.pdf |SQLDataFrame.html✨
SQLDataFrame/json (API)
NEWS
# Install 'SQLDataFrame' in R: |
install.packages('SQLDataFrame', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/sqldataframe/issues
On BioConductor:SQLDataFrame-1.19.0(bioc 3.20)SQLDataFrame-1.18.0(bioc 3.19)
Last updated 2 months agofrom:ee7374d822
Exports:acquireConndbtypeDelayedArrayDuckDBColumnSeedDuckDBColumnVectorDuckDBDataFrameextract_arrayextractCOLSextractROWSnormalizeSingleBracketReplacementValuepathreleaseConnreplaceCOLSreplaceROWSSQLColumnSeedSQLColumnVectorSQLDataFrameSQLiteColumnSeedSQLiteColumnVectorSQLiteDataFramesqltabletype
Dependencies:abindBiocGenericsbitbit64blobcachemclicpp11crayonDBIDelayedArrayduckdbfastmapglueIRangeslatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisepkgconfigplogrrlangRSQLiteS4ArraysS4VectorsSparseArrayvctrsXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Acquire the SQL file connection | acquireConn releaseConn |
Column of a SQL table | DelayedArray,SQLColumnSeed-method dim,SQLColumnSeed-method extract_array,SQLColumnSeed-method path,SQLColumnSeed-method SQLColumnSeed SQLColumnSeed-class SQLColumnVector SQLColumnVector-class sqltable,SQLColumnSeed-method type,SQLColumnSeed-method |
SQL-backed DataFrame | as.data.frame,SQLDataFrame-method cbind,SQLDataFrame-method cbind.SQLDataFrame coerce,SQLDataFrame,DFrame-method extractCOLS,SQLDataFrame-method extractROWS,SQLDataFrame,ANY-method length,SQLDataFrame-method names,SQLDataFrame-method names<-,SQLDataFrame-method ncol,SQLDataFrame-method normalizeSingleBracketReplacementValue,SQLDataFrame-method nrow,SQLDataFrame-method path,SQLDataFrame-method replaceCOLS,SQLDataFrame-method replaceROWS,SQLDataFrame-method rownames,SQLDataFrame-method rownames<-,SQLDataFrame-method SQLDataFrame SQLDataFrame-class [[,SQLDataFrame-method [[<-,SQLDataFrame-method |
SQL extensions | DelayedArray,DuckDBColumnSeed-method DelayedArray,SQLiteColumnSeed-method DuckDBColumnSeed-class DuckDBColumnVector-class DuckDBDataFrame-class SQLiteColumnSeed-class SQLiteColumnVector-class SQLiteDataFrame-class |