Package: SCBN 1.31.0
Yan Zhou
SCBN: A statistical normalization method and differential expression analysis for RNA-seq data between different species
This package provides a scale based normalization (SCBN) method to identify genes with differential expression between different species. It takes into account the available knowledge of conserved orthologous genes and the hypothesis testing framework to detect differentially expressed orthologous genes. The method on this package are described in the article 'A statistical normalization method and differential expression analysis for RNA-seq data between different species' by Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang (2018, pending publication).
Authors:
SCBN_1.31.0.tar.gz
SCBN_1.31.0.zip(r-4.7)SCBN_1.31.0.zip(r-4.6)SCBN_1.31.0.zip(r-4.5)
SCBN_1.31.0.tgz(r-4.6-any)SCBN_1.31.0.tgz(r-4.5-any)
SCBN_1.31.0.tar.gz(r-4.7-any)SCBN_1.31.0.tar.gz(r-4.6-any)
SCBN_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SCBN/json (API)
NEWS
| # Install 'SCBN' in R: |
| install.packages('SCBN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:SCBN-1.31.0(bioc 3.24)SCBN-1.30.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
differentialexpressiongeneexpressionnormalization
Last updated from:6adf75c9d7. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 136 | ||
| linux-devel-x86_64 | OK | 227 | ||
| source / vignettes | OK | 179 | ||
| linux-release-x86_64 | OK | 189 | ||
| macos-release-arm64 | OK | 161 | ||
| macos-oldrel-arm64 | OK | 168 | ||
| windows-devel | OK | 202 | ||
| windows-release | OK | 195 | ||
| windows-oldrel | OK | 218 | ||
| wasm-release | OK | 90 |
Exports:generateDatasetIter_optimalMediancalcNormsageTestNewSCBN
Dependencies:
