Package: SCBN 1.23.0

Yan Zhou

SCBN: A statistical normalization method and differential expression analysis for RNA-seq data between different species

This package provides a scale based normalization (SCBN) method to identify genes with differential expression between different species. It takes into account the available knowledge of conserved orthologous genes and the hypothesis testing framework to detect differentially expressed orthologous genes. The method on this package are described in the article 'A statistical normalization method and differential expression analysis for RNA-seq data between different species' by Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang (2018, pending publication).

Authors:Yan Zhou

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SCBN.pdf |SCBN.html✨
SCBN/json (API)
NEWS

# Install 'SCBN' in R:
install.packages('SCBN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • orthgenes - A real dataset of orthologous genes between the different species.
  • sim_data - A simulation dataset of orthologous genes between the different species.

On BioConductor:SCBN-1.23.0(bioc 3.20)SCBN-1.22.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

5 exports 1.00 score 0 dependencies 1 dependents 2 mentions

Last updated 2 months agofrom:43fd99b3de

Exports:generateDatasetIter_optimalMediancalcNormsageTestNewSCBN

Dependencies:

SCBN Tutorial

Yan Zhou

Rendered fromSCBN.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2023-04-17
Started: 2018-08-16