Package: SBGNview 1.19.0

Weijun Luo

SBGNview: "SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"

SBGNview is a tool set for pathway based data visalization, integration and analysis. SBGNview is similar and complementary to the widely used Pathview, with the following key features: 1. Pathway definition by the widely adopted Systems Biology Graphical Notation (SBGN); 2. Supports multiple major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP) and user defined pathways; 3. Covers 5,200 reference pathways and over 3,000 species by default; 4. Extensive graphics controls, including glyph and edge attributes, graph layout and sub-pathway highlight; 5. SBGN pathway data manipulation, processing, extraction and analysis.

Authors:Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo

SBGNview_1.19.0.tar.gz
SBGNview_1.19.0.zip(r-4.5)SBGNview_1.19.0.zip(r-4.4)SBGNview_1.19.0.zip(r-4.3)
SBGNview_1.19.0.tgz(r-4.4-any)SBGNview_1.19.0.tgz(r-4.3-any)
SBGNview_1.19.0.tar.gz(r-4.5-noble)SBGNview_1.19.0.tar.gz(r-4.4-noble)
SBGNview_1.19.0.tgz(r-4.4-emscripten)SBGNview_1.19.0.tgz(r-4.3-emscripten)
SBGNview.pdf |SBGNview.html✨
SBGNview/json (API)
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Peer review:

Bug tracker:https://github.com/datapplab/sbgnview/issues

On BioConductor:SBGNview-1.19.0(bioc 3.20)SBGNview-1.18.0(bioc 3.19)

bioconductor-package

14 exports 0.49 score 80 dependencies

Last updated 2 months agofrom:666bbc2941

Exports:changeDataIdchangeIdsdownloadSbgnFilefindPathwayshighlightArcshighlightNodeshighlightPathloadMappingTableoutputFileoutputFile<-renderSbgnsbgn.gsetssbgnNodesSBGNview

Dependencies:abindAnnotationDbiaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64bitopsblobbookdownbslibcachemclicpp11crayoncurlDBIDelayedArraydigestevaluatefastmapfontawesomefsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluegraphhighrhtmltoolshttrigraphIRangesjquerylibjsonliteKEGGgraphKEGGRESTknitrlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbpathviewpkgconfigplogrpngR6rappdirsrbibutilsRCurlRdpackRgraphvizrlangrmarkdownRSQLitersvgS4ArraysS4VectorssassSBGNview.dataSparseArraySummarizedExperimentsystinytexUCSC.utilsvctrsxfunXMLxml2XVectoryamlzlibbioc