Package: SANTA 2.49.0

Alex Cornish

SANTA: Spatial Analysis of Network Associations

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Authors:Alex Cornish [cre, aut]

SANTA_2.49.0.tar.gz
SANTA_2.49.0.zip(r-4.7)SANTA_2.49.0.zip(r-4.6)SANTA_2.49.0.zip(r-4.5)
SANTA_2.49.0.tgz(r-4.6-x86_64)SANTA_2.49.0.tgz(r-4.6-arm64)SANTA_2.49.0.tgz(r-4.5-x86_64)SANTA_2.49.0.tgz(r-4.5-arm64)
SANTA_2.49.0.tar.gz(r-4.7-arm64)SANTA_2.49.0.tar.gz(r-4.7-x86_64)SANTA_2.49.0.tar.gz(r-4.6-arm64)SANTA_2.49.0.tar.gz(r-4.6-x86_64)
SANTA_2.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SANTA/json (API)
NEWS

# Install 'SANTA' in R:
install.packages('SANTA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alexjcornish/santa/issues

Datasets:

On BioConductor:SANTA-2.49.0(bioc 3.24)SANTA-2.48.0(bioc 3.23)

networknetworkenrichmentclustering

4.85 score 6 scripts 417 downloads 7 mentions 10 exports 11 dependencies

Last updated from:09482a2826. Checks:1 WARNING, 13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING169
linux-devel-arm64OK222
linux-devel-x86_64OK234
source / vignettesOK229
linux-release-arm64OK181
linux-release-x86_64OK216
macos-release-arm64OK116
macos-release-x86_64OK207
macos-oldrel-arm64OK109
macos-oldrel-x86_64OK243
windows-develOK154
windows-releaseOK199
windows-oldrelOK134
wasm-releaseOK138

Exports:BinGraphCompactnessCreateGridDistGraphGraphDiffusionGraphMFPTKnetKnodeplot.KnetSpreadHits

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs

Introduction to SANTA

Rendered fromSANTA-vignette.Rmdusingknitr::rmarkdownon May 22 2026.

Last update: 2024-06-17
Started: 2014-06-20