Package: SANTA 2.49.0

Vignette for SANTA | Alex J. Cornish and Florian Markowetz | Introduction | Overview of SANTA | The guilt-by-association principle | The Knet function | The Knode function | Measuring the distance between pairs of vertices | Case studies | i) Knet successfully identifies clustering on simulated networks | ii) Comparing Knet to Compactness | iii) Using Knet to demonstrate that correlation in GI profile produce functionally more informative networks | iv) Using Knet to investigate the functional rewiring of the yeast interaction network in response to MMS-treatment | v) Using Knet to investigate the functional rewiring of the yeast interaction network in response to UV damage | vi) Using Knet to identify the network most informative about cancer cell lines | Session info