Package: S4Vectors 0.45.2

Hervé Pagès

S4Vectors: Foundation of vector-like and list-like containers in Bioconductor

The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, Factor, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).

Authors:Hervé Pagès [aut, cre], Michael Lawrence [aut], Patrick Aboyoun [aut], Aaron Lun [ctb], Beryl Kanali [ctb]

S4Vectors_0.45.2.tar.gz
S4Vectors_0.45.2.zip(r-4.5)S4Vectors_0.45.2.zip(r-4.4)S4Vectors_0.45.2.zip(r-4.3)
S4Vectors_0.45.2.tgz(r-4.4-x86_64)S4Vectors_0.45.2.tgz(r-4.4-arm64)S4Vectors_0.45.2.tgz(r-4.3-x86_64)S4Vectors_0.45.2.tgz(r-4.3-arm64)
S4Vectors_0.45.2.tar.gz(r-4.5-noble)S4Vectors_0.45.2.tar.gz(r-4.4-noble)
S4Vectors_0.45.2.tgz(r-4.4-emscripten)S4Vectors_0.45.2.tgz(r-4.3-emscripten)
S4Vectors.pdf |S4Vectors.html✨
S4Vectors/json (API)
NEWS

# Install 'S4Vectors' in R:
install.packages('S4Vectors', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/s4vectors/issues

On BioConductor:S4Vectors-0.45.2(bioc 3.21)S4Vectors-0.44.0(bioc 3.20)

infrastructuredatarepresentationbioconductor-packagecore-package

16.10 score 18 stars 1.8k packages 1.1k scripts 115k downloads 7 mentions 292 exports 2 dependencies

Last updated 1 months agofrom:336e71ee64. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 16 2024
R-4.5-win-x86_64WARNINGDec 16 2024
R-4.5-linux-x86_64WARNINGDec 16 2024
R-4.4-win-x86_64WARNINGDec 16 2024
R-4.4-mac-x86_64WARNINGDec 16 2024
R-4.4-mac-aarch64WARNINGDec 16 2024
R-4.3-win-x86_64WARNINGDec 16 2024
R-4.3-mac-x86_64WARNINGDec 16 2024
R-4.3-mac-aarch64WARNINGDec 16 2024

Exports:.Call2%in%activeactive<-aggregateaggregate.VectoranyDuplicatedanyDuplicated.NSBSanyDuplicated.RleanyDuplicated.Vectorappendas.character.LLintas.data.frameas.data.frame.DataFrameas.data.frame.Hitsas.data.frame.Vectoras.envas.factoras.integer.LLintas.listas.list.Rleas.list.SimpleListas.list.TransposedDataFrameas.list.Vectoras.LLintas.logical.LLintas.matrixas.matrix.Vectoras.numeric.LLintas.tableas.vector.RlebindCOLSbindROWSbreakTiesbycbindcbind_mcols_for_displaycbind.DataFramecbind.Listcbind.RectangularDataclassNameForDisplaycoercecolnamescolnames<-combineColscombineRowscombineUniqueColscomplete.casescoolcatcorcountLnodeHitscountMatchescountQueryHitscountRnodeHitscountSubjectHitscovDataFrameDataFrameFactordecodediff.Rledo.calldroplevelsdroplevels.Factordroplevels.Listdroplevels.Rleduplicatedduplicated.DataFrameduplicated.VectorduplicatedIntegerPairsduplicatedIntegerQuadselementMetadataelementMetadata<-elementNROWSelementTypeendendoapplyevalevalSeparatelyexpandexpand.gridextractCOLSextractROWSFactorFactorToClassFilterFilterMatrixfilterRulesFilterRulesfindMatchesfindRunfirstfirst<-foldfromget_showHeadLinesget_showTailLinesgetListElementgrepgreplheadhead.LLinthead.RectangularDatahead.VectorHitsHitsListhorizontal_slot_namesIintersectintersect.Vectoris.LLintis.unsortedisConstantisEmptyisRedundantHitisSelfHitisSequenceisSingleIntegerisSingleNumberisSingleNumberOrNAisSingleStringisSingleStringOrNAisSortedisStrictlySortedisTRUEorFALSElapplylevelslevels.RleListLLintmake_zero_col_DFramemakeClassinfoRowForCompactPrintingmakeNakedCharacterMatrixForDisplaymakePrettyMatrixForCompactPrintingmatchmatchIntegerPairsmatchIntegerQuadsmcolsmcols<-mean.Rlemedian.RlemendoapplymergemergeROWSmetadatametadata<-mstackNA_LLint_na.excludena.omitncharncolnew2nLnodennodenormalizeDoubleBracketSubscriptnormalizeSingleBracketReplacementValuenormalizeSingleBracketSubscriptnRnodenrownrunNSBSOpsorderorderIntegerPairsorderIntegerQuadsPairsparallel_slot_namesparallelVectorNamesparamspcpcomparepcompareRecursivelyprintAtomicVectorInAGridquantile.RlequeryHitsqueryLengthrankrbindrbind.RectangularDatarecycleArgrecycleCharacterArgrecycleIntegerArgrecycleLogicalArgrecycleNumericArgReducerelistToClassremapHitsrenamerep.intreplaceCOLSreplaceROWSrevrev.Rlerev.VectorrevElementsRlerownamesROWNAMESrownames<-ROWNAMES<-runLengthrunLength<-runmeanrunqrunsumrunValuerunValue<-runwtsumsafeExplodesameAsPreviousROWsapplysdsecondsecond<-selectHitsSelfHitsselfmatchselfmatchIntegerPairsselfmatchIntegerQuadsset_showHeadLinesset_showTailLinessetdiffsetdiff.Vectorsetequalsetequal.VectorsetListElementsetMethodssetValidity2shiftApplyshowshowAsCellSimpleListsortsort.DataFramesort.Listsort.Rlesort.VectorspacesplitsplitAsListstackstartsubjectHitssubjectLengthsubsetsubset.VectorsubsetByFiltersubstrsubstringsummarySummarysummary.Hitssummary.Rlesummary.Vectorsvn.timett.DataFramet.Hitst.HitsListt.TransposedDataFrametailtail.LLinttail.RectangularDatatail.VectortotoListOfIntegerVectorstransformtransform.DataFrametransform.Vectorunfactorunionunion.Vectoruniqueunique.DataFrameunique.VectorunnameunstrsplitupdateObjectvaluesvalues<-varvertical_slot_nameswidthwindowwindow.LLintwindow.Vectorwithwithinwmsgxtabszipdownzipup

Dependencies:BiocGenericsgenerics

A quick overview of the S4 class system

Rendered fromS4QuickOverview.Rnwusingutils::Sweaveon Dec 16 2024.

Last update: 2020-10-07
Started: 2016-06-22

An Overview of the S4Vectors package

Patrick Aboyoun, Michael Lawrence, Hervé Pagès

Rendered fromS4VectorsOverview.Rmdusingknitr::rmarkdownon Dec 16 2024.

Last update: 2024-04-05
Started: 2024-04-05

Rle Tips and Tricks

Patrick Aboyoun, Beryl Kanali

Rendered fromRleTricks.Rmdusingknitr::rmarkdownon Dec 16 2024.

Last update: 2022-12-07
Started: 2022-12-07

Readme and manuals

Help Manual

Help pageTopics
Compute summary statistics of subsets of vector-like objectsaggregate aggregate,data.frame-method aggregate,List-method aggregate,matrix-method aggregate,Rle-method aggregate,ts-method aggregate,Vector-method aggregate-methods aggregate.Vector
Annotated classAnnotated Annotated-class metadata metadata,Annotated-method metadata<- metadata<-,Annotated-method
Combine objects along their ROWS or COLSbindCOLS bindROWS bindROWS,ANY-method bindROWS,NULL-method
Some utility functions to operate on stringssafeExplode svn.time unstrsplit unstrsplit,character-method unstrsplit,list-method
DataFrame objectsas.data.frame,DataFrame-method as.data.frame.DataFrame as.matrix,DataFrame-method class:DataFrame class:DFrame classNameForDisplay,DFrame-method coerce,ANY,DataFrame-method coerce,ANY,DataFrame_OR_NULL-method coerce,ANY,DFrame-method coerce,AsIs,DFrame-method coerce,data.frame,DFrame-method coerce,data.table,DFrame-method coerce,list,DFrame-method coerce,NULL,DFrame-method coerce,SimpleList,DataFrame-method coerce,SimpleList,DFrame-method coerce,table,DFrame-method coerce,Vector,DFrame-method coerce,xtabs,DFrame-method colnames,DataFrame-method colnames<-,DataFrame-method DataFrame DataFrame-class DFrame DFrame-class dimnames<-,DataFrame-method droplevels,DFrame-method extractCOLS,DataFrame-method extractROWS,DataFrame,ANY-method getListElement,DataFrame-method horizontal_slot_names,DFrame-method length,DataFrame-method makeNakedCharacterMatrixForDisplay,DataFrame-method make_zero_col_DFrame mergeROWS,DFrame-method names,DataFrame-method ncol,DataFrame-method nrow,DataFrame-method rep,DataFrame-method replaceCOLS,DFrame-method replaceROWS,DFrame-method rownames,DataFrame-method rownames<-,DFrame-method show,DataFrame-method showAsCell,DataFrame-method updateObject,DataFrame-method vertical_slot_names,DFrame-method [,DataFrame-method [<-,DataFrame-method [[,DataFrame-method [[,DFrame-method [[<-,DFrame-method
Combine DataFrame objects along their rows or columns, or merge thembindROWS,DataFrame-method c,DataFrame-method cbind,DataFrame-method cbind.DataFrame combineCols,DataFrame-method combineRows,DataFrame-method DataFrame-combine merge,data.frame,DataFrame-method merge,DataFrame,data.frame-method merge,DataFrame,DataFrame-method
DataFrame comparison methods<=,DataFrame,DataFrame-method ==,DataFrame,DataFrame-method duplicated,DataFrame-method duplicated.DataFrame match,DataFrame,DataFrame-method order,DataFrame-method pcompare,DataFrame,DataFrame-method sameAsPreviousROW,DataFrame-method sort,DataFrame-method sort.DataFrame unique,DataFrame-method unique.DataFrame
Common operations on DataFrame objectscomplete.cases,DataFrame-method DataFrame-utils is.na,DataFrame-method na.exclude,DataFrame-method na.omit,DataFrame-method relistToClass,data.frame-method relistToClass,DataFrame-method transform,DataFrame-method transform.DataFrame xtabs,DataFrame-method
DataFrameFactor objects$,DataFrameFactor-method class:DataFrameFactor DataFrameFactor DataFrameFactor-class dim,DataFrameFactor-method dimnames,DataFrameFactor-method show,DataFrameFactor-method [,DataFrameFactor,ANY,ANY,ANY-method [,DataFrameFactor-method [[,DataFrameFactor,ANY,ANY-method [[,DataFrameFactor-method
Unlist the list-like columns of a DataFrame objectexpand expand,DataFrame-method expand,Vector-method
Factor objectsas.character,Factor-method as.factor,Factor-method as.integer,Factor-method as.raw,Factor-method bindROWS,Factor-method class:Factor class:integer_OR_raw coerce,factor,Factor-method coerce,vector_OR_Vector,Factor-method droplevels,Factor-method droplevels.Factor Factor Factor-class FactorToClass FactorToClass,vector_OR_Vector-method integer_OR_raw integer_OR_raw-class levels levels<- levels<-,Factor-method match,Factor,Factor-method names,Factor-method names<-,Factor-method nlevels nlevels,Factor-method parallel_slot_names,Factor-method pcompare,Factor,Factor-method selfmatch,Factor-method show,Factor-method showAsCell,Factor-method unfactor unfactor,Factor-method unfactor,factor-method xtfrm,Factor-method
Matrix for Filter Resultscbind,FilterMatrix-method FilterMatrix FilterMatrix-class filterRules filterRules,FilterMatrix-method rbind,FilterMatrix-method show,FilterMatrix-method summary,FilterMatrix-method [,FilterMatrix-method
Collection of Filter Rules&,FilterRules,FilterRules-method active active,FilterRules-method active<- active<-,FilterRules-method class:expression_OR_function class:FilterRules coerce,ANY,FilterRules-method coerce,function,FilterClosure-method coerce,SimpleList,FilterRules-method coerce,standardGeneric,FilterClosure-method eval,FilterRules,ANY-method evalSeparately evalSeparately,FilterRules-method expression_OR_function expression_OR_function-class FilterRules FilterRules-class parallel_slot_names,FilterRules-method params params,FilterClosure-method show,FilterClosure-method subsetByFilter subsetByFilter,ANY,FilterRules-method summary,FilterRules-method [,FilterRules-method [[<-,FilterRules-method
Hits objectsas.data.frame,Hits-method as.data.frame.Hits as.matrix,Hits-method as.table,Hits-method bindROWS,Hits-method breakTies class:Hits class:SelfHits class:SortedByQueryHits class:SortedByQuerySelfHits classNameForDisplay,SortedByQueryHits-method coerce,Hits,DFrame-method coerce,Hits,SelfHits-method coerce,Hits,SortedByQueryHits-method coerce,Hits,SortedByQuerySelfHits-method coerce,SelfHits,SortedByQuerySelfHits-method coerce,SortedByQueryHits,SortedByQuerySelfHits-method countLnodeHits countLnodeHits,Hits-method countQueryHits countRnodeHits countRnodeHits,Hits-method countSubjectHits extractROWS,SortedByQueryHits,ANY-method from from,Hits-method Hits Hits-class isRedundantHit isSelfHit makeNakedCharacterMatrixForDisplay,Hits-method nLnode nLnode,Hits-method nnode nnode,SelfHits-method nRnode nRnode,Hits-method parallel_slot_names,Hits-method queryHits queryLength remapHits selectHits SelfHits SelfHits-class show,Hits-method sort,SortedByQueryHits-method SortedByQueryHits SortedByQueryHits-class SortedByQuerySelfHits SortedByQuerySelfHits-class subjectHits subjectLength summary,Hits-method summary.Hits t,Hits-method t.Hits to to,Hits-method updateObject,Hits-method
Comparing and ordering hitsHits-comparison match,Hits,Hits-method order,Hits-method pcompare,Hits,Hits-method
Set operations on Hits objectsHits-setops union,SortedByQueryHits,Hits-method
List of Hits objectsas.matrix,HitsList-method as.table,HitsList-method class:HitsList class:SelfHitsList class:SortedByQueryHitsList class:SortedByQuerySelfHitsList coerce,HitsList,SortedByQueryHitsList-method coerce,SortedByQueryHitsList,HitsList-method HitsList HitsList-class queryHits,HitsList-method relistToClass,Hits-method relistToClass,SortedByQueryHits-method SelfHitsList SelfHitsList-class SortedByQueryHitsList SortedByQueryHitsList-class SortedByQuerySelfHitsList SortedByQuerySelfHitsList-class space space,HitsList-method splitAsList,SortedByQueryHits,ANY-method subjectHits,HitsList-method t,HitsList-method
Some utility functions to operate on integer vectorsduplicatedIntegerPairs duplicatedIntegerQuads isSequence matchIntegerPairs matchIntegerQuads orderIntegerPairs orderIntegerQuads selfmatchIntegerPairs selfmatchIntegerQuads toListOfIntegerVectors
Test if a vector-like object is sortedisConstant isConstant,array-method isConstant,integer-method isConstant,numeric-method isSorted isSorted,ANY-method isStrictlySorted isStrictlySorted,ANY-method
List objects$,List-method $<-,List-method as.data.frame,List-method as.list,List-method class:List class:list_OR_List coerce,ANY,List-method coerce,integer,List-method coerce,List,list-method elementNROWS elementNROWS,ANY-method elementNROWS,List-method elementType elementType,List-method elementType,vector-method getListElement,List-method isEmpty isEmpty,ANY-method isEmpty,List-method List List-class list_OR_List list_OR_List-class parallelVectorNames,List-method setListElement,List-method show,List-method showAsCell,List-method unlist,List-method [,List-method [<-,List-method [[,List-method [[<-,List-method
Common operations on List objectscbind,List-method cbind.List droplevels,List-method droplevels.List endoapply Filter,List-method Find,List-method lapply,List-method List-utils Map,List-method mendoapply pc Position,List-method rbind,List-method Reduce,List-method revElements revElements,List-method revElements,list-method sapply,List-method within,List-method
LLint vectorsas.character,LLint-method as.character.LLint as.integer,LLint-method as.integer.LLint as.LLint as.logical,LLint-method as.logical.LLint as.numeric,LLint-method as.numeric.LLint bindROWS,LLint-method c,LLint-method class:integer_OR_LLint class:LLint coerce,character,LLint-method coerce,integer,LLint-method coerce,logical,LLint-method coerce,numeric,LLint-method integer_OR_LLint integer_OR_LLint-class is.LLint is.na,LLint-method length,LLint-method LLint LLint-class NA_LLint_ Ops,LLint,LLint-method Ops,LLint,numeric-method Ops,numeric,LLint-method show,LLint-method showAsCell,LLint-method Summary,LLint-method
Pairs objectsas.data.frame,Pairs-method class:Pairs coerce,list_OR_List,Pairs-method coerce,Pairs,DFrame-method first first,Pairs-method first<- first<-,Pairs-method makeNakedCharacterMatrixForDisplay,Pairs-method match,Pairs,Pairs-method names,Pairs-method names<-,Pairs-method order,Pairs-method Pairs Pairs-class parallel_slot_names,Pairs-method pcompare,Pairs,Pairs-method sameAsPreviousROW,Pairs-method second second,Pairs-method second<- second<-,Pairs-method show,Pairs-method zipup,Pairs,missing-method
RectangularData objectscbind,RectangularData-method cbind.RectangularData class:RectangularData combineCols combineRows combineUniqueCols dim,RectangularData-method dimnames,RectangularData-method dimnames<-,RectangularData-method head,RectangularData-method head.RectangularData horizontal_slot_names rbind,RectangularData-method rbind.RectangularData RectangularData RectangularData-class ROWNAMES ROWNAMES,ANY-method ROWNAMES,RectangularData-method ROWNAMES<- ROWNAMES<-,ANY-method ROWNAMES<-,RectangularData-method subset,RectangularData-method tail,RectangularData-method tail.RectangularData vertical_slot_names
Rle objects%in%,Rle,ANY-method anyDuplicated,Rle-method anyDuplicated,RleNSBS-method anyDuplicated.Rle anyNA,Rle-method append,Rle,vector-method append,vector,Rle-method as.data.frame,Rle-method as.factor,Rle-method as.integer,RleNSBS-method as.list,Rle-method as.list.Rle as.vector,Rle-method as.vector.Rle bindROWS,Rle-method class:Rle coerce,ANY,Rle-method coerce,Rle,character-method coerce,Rle,complex-method coerce,Rle,factor-method coerce,Rle,integer-method coerce,Rle,list-method coerce,Rle,logical-method coerce,Rle,numeric-method coerce,Rle,raw-method coerce,Rle,vector-method decode decode,ANY-method decode,Rle-method duplicated,Rle-method end,Rle-method extractROWS,Rle,ANY-method extractROWS,Rle,NSBS-method extractROWS,Rle,RangeNSBS-method extractROWS,Rle,RleNSBS-method findRun findRun,Rle-method intersect,ANY,Rle-method intersect,Rle,ANY-method intersect,Rle,Rle-method is.finite,Rle-method is.na,Rle-method is.unsorted,Rle-method isStrictlySorted,Rle-method isStrictlySorted,RleNSBS-method length,Rle-method length,RleNSBS-method match,ANY,Rle-method match,Rle,ANY-method match,Rle,Rle-method nrun nrun,Rle-method NSBS,Rle-method order,Rle-method rank,Rle-method rep,Rle-method rep.int,Rle-method replaceROWS,Rle,ANY-method rev,Rle-method rev.Rle Rle Rle,ANY-method Rle,Rle-method Rle-class runLength runLength,Rle-method runLength<- runLength<-,Rle-method runValue runValue,Rle-method runValue<- runValue<-,Rle-method setdiff,ANY,Rle-method setdiff,Rle,ANY-method setdiff,Rle,Rle-method show,Rle-method sort,Rle-method sort.Rle start,Rle-method table,Rle-method tabulate,Rle-method union,ANY,Rle-method union,Rle,ANY-method union,Rle,Rle-method unique,Rle-method width,Rle-method xtfrm,Rle-method [,Rle-method [<-,Rle,ANY-method
Fixed-width running window summariesRle-runstat runmean runmean,Rle-method runmed,Rle-method runq runq,Rle-method runsum runsum,Rle-method runwtsum runwtsum,Rle-method smoothEnds,Rle-method
Common operations on Rle objects!,Rle-method chartr,ANY,ANY,Rle-method Complex,Rle-method cor,Rle,Rle-method cov,Rle,Rle-method diff,Rle-method diff.Rle droplevels,Rle-method droplevels.Rle gsub,ANY,ANY,Rle-method IQR,Rle-method levels,Rle-method levels.Rle levels<-,Rle-method mad,Rle-method mad.Rle Math,Rle-method Math2,Rle-method mean,Rle-method mean.Rle median,Rle-method median.Rle nchar,Rle-method Ops,Rle,Rle-method Ops,Rle,vector-method Ops,vector,Rle-method paste,Rle-method pmax,Rle-method pmax.int,Rle-method pmin,Rle-method pmin.int,Rle-method quantile,Rle-method quantile.Rle Rle-utils sd,Rle-method sub,ANY,ANY,Rle-method substr,Rle-method substring,Rle-method Summary,Rle-method summary,Rle-method summary.Rle tolower,Rle-method toupper,Rle-method var,Rle,missing-method var,Rle,Rle-method which,Rle-method which.max,Rle-method
Apply a function over subsequences of 2 vector-like objectsshiftApply shiftApply,Vector,Vector-method shiftApply,vector,vector-method shiftApply-methods
Display utilitiescbind_mcols_for_display classNameForDisplay classNameForDisplay,ANY-method coolcat get_showHeadLines get_showTailLines makeClassinfoRowForCompactPrinting makeNakedCharacterMatrixForDisplay makeNakedCharacterMatrixForDisplay,ANY-method makePrettyMatrixForCompactPrinting printAtomicVectorInAGrid set_showHeadLines set_showTailLines show-utils showAsCell showAsCell,ANY-method showAsCell,AsIs-method showAsCell,character-method showAsCell,data.frame-method showAsCell,list-method showAsCell,numeric-method showHeadLines showTailLines
SimpleList objectsas.env,SimpleList-method as.list,SimpleList-method as.list.SimpleList class:SimpleList classNameForDisplay,SimpleList-method coerce,ANY,SimpleList-method coerce,list,List-method lapply,SimpleList-method names,SimpleList-method names<-,SimpleList-method parallel_slot_names,SimpleList-method SimpleList SimpleList-class updateObject,SimpleList-method
Divide a vector-like object into groupsrelistToClass relistToClass,ANY-method split split,ANY,Vector-method split,list,Vector-method split,Vector,ANY-method split,Vector,Vector-method splitAsList splitAsList,ANY,ANY-method
Stack objectsmstack mstack,DataFrame-method mstack,Vector-method mstack,vector-method stack,List-method stack,matrix-method stack-methods
Subsetting utilitiesanyDuplicated,NSBS-method anyDuplicated,RangeNSBS-method anyDuplicated.NSBS as.integer,NativeNSBS-method as.integer,RangeNSBS-method class:NSBS extractCOLS extractROWS extractROWS,ANY,ANY-method extractROWS,array,RangeNSBS-method extractROWS,data.frame,RangeNSBS-method extractROWS,vector_OR_factor,RangeNSBS-method getListElement getListElement,list-method isStrictlySorted,NSBS-method isStrictlySorted,RangeNSBS-method length,NSBS-method length,RangeNSBS-method max,NSBS-method max,RangeNSBS-method mergeROWS mergeROWS,ANY,ANY-method normalizeDoubleBracketSubscript normalizeSingleBracketReplacementValue normalizeSingleBracketReplacementValue,ANY-method normalizeSingleBracketSubscript NSBS NSBS,ANY-method NSBS,character-method NSBS,factor-method NSBS,logical-method NSBS,missing-method NSBS,NSBS-method NSBS,NULL-method NSBS,numeric-method NSBS-class replaceCOLS replaceROWS replaceROWS,ANY,ANY-method setListElement setListElement,list-method show,RangeNSBS-method subsetting-utils
TransposedDataFrame objectsas.list,TransposedDataFrame-method as.list.TransposedDataFrame as.matrix,TransposedDataFrame-method bindCOLS,TransposedDataFrame-method bindROWS,TransposedDataFrame-method class:TransposedDataFrame coerce,ANY,TransposedDataFrame-method coerce,DataFrame,TransposedDataFrame-method coerce,TransposedDataFrame,DataFrame-method colnames,TransposedDataFrame-method dimnames<-,TransposedDataFrame-method extractCOLS,TransposedDataFrame-method extractROWS,TransposedDataFrame,ANY-method getListElement,TransposedDataFrame-method length,TransposedDataFrame-method makeNakedCharacterMatrixForDisplay,TransposedDataFrame-method names,TransposedDataFrame-method names<-,TransposedDataFrame-method ncol,TransposedDataFrame-method normalizeSingleBracketReplacementValue,TransposedDataFrame-method nrow,TransposedDataFrame-method rownames,TransposedDataFrame-method show,TransposedDataFrame-method t,DataFrame-method t,TransposedDataFrame-method t.DataFrame t.TransposedDataFrame TransposedDataFrame TransposedDataFrame-class [,TransposedDataFrame-method [<-,TransposedDataFrame-method
Vector objectsanyNA,Vector-method append append,Vector,Vector-method as.character,Vector-method as.complex,Vector-method as.data.frame,Vector-method as.data.frame.Vector as.double,Vector-method as.env as.env,NULL-method as.env,Vector-method as.integer,Vector-method as.list,Vector-method as.list.Vector as.logical,Vector-method as.matrix,Vector-method as.matrix.Vector as.numeric,Vector-method as.raw,Vector-method bindROWS,Vector-method c c,Vector-method class:Vector class:vector_OR_Vector coerce,Vector,character-method coerce,Vector,complex-method coerce,Vector,data.frame-method coerce,Vector,double-method coerce,Vector,factor-method coerce,Vector,integer-method coerce,Vector,logical-method coerce,Vector,numeric-method coerce,Vector,raw-method coerce,Vector,vector-method elementMetadata elementMetadata,Vector-method elementMetadata<- elementMetadata<-,Vector-method expand.grid expand.grid,Vector-method head head,Vector-method head.Vector is.na,Vector-method length,Vector-method lengths,Vector-method mcols mcols,Vector-method mcols<- mcols<-,Vector-method mergeROWS,Vector,ANY-method parallelVectorNames parallelVectorNames,ANY-method parallel_slot_names parallel_slot_names,Vector-method rename rename,Vector-method rename,vector-method rep rep,Vector-method rep.int rep.int,Vector-method replaceROWS,Vector,ANY-method rev rev,Vector-method rev.Vector subset subset,Vector-method subset.Vector summary,Vector-method summary.Vector tail tail,Vector-method tail.Vector transform,Vector-method transform.Vector unname,Vector-method updateObject,Vector-method values values,Vector-method values<- values<-,Vector-method Vector Vector-class vector_OR_Vector vector_OR_Vector-class window window,Vector-method window.Vector [ [,Vector-method [<-,Vector-method
Compare, order, tabulate vector-like objects!=,ANY,Vector-method !=,Vector,ANY-method !=,Vector,Vector-method %in%,ANY,Vector-method %in%,Vector,ANY-method %in%,Vector,Vector-method <,ANY,Vector-method <,Vector,ANY-method <,Vector,Vector-method <=,ANY,Vector-method <=,Vector,ANY-method <=,Vector,Vector-method ==,ANY,Vector-method ==,Vector,ANY-method ==,Vector,Vector-method >,ANY,Vector-method >,Vector,ANY-method >,Vector,Vector-method >=,ANY,Vector-method >=,Vector,ANY-method >=,Vector,Vector-method anyDuplicated,Vector-method anyDuplicated.Vector countMatches countMatches,ANY,ANY-method duplicated,Vector-method duplicated.Vector findMatches findMatches,ANY,ANY-method findMatches,ANY,missing-method match match,Vector,Vector-method pcompare pcompare,ANY,ANY-method pcompare,numeric,numeric-method rank,Vector-method sameAsPreviousROW sameAsPreviousROW,ANY-method selfmatch selfmatch,ANY-method selfmatch,factor-method selfmatch,Vector-method sort,Vector-method sort.Vector table,Vector-method unique,Vector-method unique.Vector Vector-comparison xtfrm,Vector-method
Merge vector-like objectsmerge merge,Vector,Vector-method Vector-merge
Set operations on vector-like objectsintersect,Vector,Vector-method intersect.Vector setdiff,Vector,Vector-method setdiff.Vector setequal,Vector,Vector-method setequal.Vector union,Vector,Vector-method union.Vector Vector-setops
Convert between parallel vectors and listszipdown zipdown,ANY-method zipdown,List-method zipup zipup,ANY,ANY-method