Package: RiboCrypt 1.19.0

Michal Swirski

RiboCrypt: Interactive visualization in genomics

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Authors:Michal Swirski [aut, cre, cph], Haakon Tjeldnes [aut, ctb], Kornel Labun [ctb]

RiboCrypt_1.19.0.tar.gz
RiboCrypt_1.19.0.zip(r-4.7-any)RiboCrypt_1.19.0.zip(r-4.6-any)RiboCrypt_1.19.0.zip(r-4.5-any)
RiboCrypt_1.19.0.tgz(r-4.6-any)RiboCrypt_1.19.0.tgz(r-4.5-any)
RiboCrypt_1.19.0.tar.gz(r-4.7-any)RiboCrypt_1.19.0.tar.gz(r-4.6-any)
RiboCrypt_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RiboCrypt/json (API)

# Install 'RiboCrypt' in R:
install.packages('RiboCrypt', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/m-swirski/ribocrypt/issues

On BioConductor:RiboCrypt-1.19.0(bioc 3.24)RiboCrypt-1.18.0(bioc 3.23)

softwaresequencingriboseqrnaseq

4.89 score 6 stars 26 scripts 460 downloads 9 exports 173 dependencies

Last updated from:cbd1ebc4a0. Checks:1 NOTE, 7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE253
linux-develWARNING485
source / vignettesERROR390
linux-releaseWARNING483
macos-releaseWARNING262
macos-oldrelWARNING350
windows-develWARNING413
windows-releaseWARNING392
windows-oldrelWARNING460
wasm-releaseOK211

Exports:browseRCcollection_dir_from_expcollection_path_from_expDEG_plotmake_rc_urlmultiOmicsPlot_animatemultiOmicsPlot_listmultiOmicsPlot_ORFikExpRiboCrypt_app

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtbiomartrBiostringsbitbit64bitopsblobBSgenomebslibcachemcigarillocirclizeclicliprclueclustercodetoolscolorspacecommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDESeq2digestdoParalleldownloaderdplyrDTevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfstfstcorefutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGetoptLongggplot2GlobalOptionsgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2IRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelitedownlocfitmagrittrmarkdownMatrixMatrixGenericsmatrixStatsmemoisemimeNGLVieweRopensslORFikotelphilentropypillarpkgconfigplotlypngpoormanprettyunitsprogresspromisespurrrqs2R.methodsS3R.ooR.utilsR6rappdirsrclipboardRColorBrewerRcppRcppArmadilloRcppParallelRCurlreadrrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinycssloadersshinyhelpershinyjquishinyjsshinyWidgetssnowsourcetoolsSparseArraystringfishstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomwithrwritexlxfunXMLxml2xtableXVectoryaml