Package: RepViz 1.21.0

Thomas Faux, Asta Laiho

RepViz: Replicate oriented Visualization of a genomic region

RepViz enables the view of a genomic region in a simple and efficient way. RepViz allows simultaneous viewing of both intra- and intergroup variation in sequencing counts of the studied conditions, as well as their comparison to the output features (e.g. identified peaks) from user selected data analysis methods.The RepViz tool is primarily designed for chromatin data such as ChIP-seq and ATAC-seq, but can also be used with other sequencing data such as RNA-seq, or combinations of different types of genomic data.

Authors:Thomas Faux, Kalle Rytkönen, Asta Laiho, Laura L. Elo

RepViz_1.21.0.tar.gz
RepViz_1.21.0.zip(r-4.5)RepViz_1.21.0.zip(r-4.4)RepViz_1.21.0.zip(r-4.3)
RepViz_1.21.0.tgz(r-4.4-any)RepViz_1.21.0.tgz(r-4.3-any)
RepViz_1.21.0.tar.gz(r-4.5-noble)RepViz_1.21.0.tar.gz(r-4.4-noble)
RepViz_1.21.0.tgz(r-4.4-emscripten)RepViz_1.21.0.tgz(r-4.3-emscripten)
RepViz.pdf |RepViz.html✨
RepViz/json (API)
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On BioConductor:RepViz-1.21.0(bioc 3.20)RepViz-1.20.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

1 exports 0.71 score 74 dependencies 1 mentions

Last updated 2 months agofrom:325bf8e0dc

Exports:RepViz

Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrdigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRhtslibrlangRsamtoolsRSQLiteS4VectorssnowstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrxml2XVectorzlibbioc