Package: RepViz 1.23.0
RepViz: Replicate oriented Visualization of a genomic region
RepViz enables the view of a genomic region in a simple and efficient way. RepViz allows simultaneous viewing of both intra- and intergroup variation in sequencing counts of the studied conditions, as well as their comparison to the output features (e.g. identified peaks) from user selected data analysis methods.The RepViz tool is primarily designed for chromatin data such as ChIP-seq and ATAC-seq, but can also be used with other sequencing data such as RNA-seq, or combinations of different types of genomic data.
Authors:
RepViz_1.23.0.tar.gz
RepViz_1.23.0.zip(r-4.5)RepViz_1.23.0.zip(r-4.4)RepViz_1.23.0.zip(r-4.3)
RepViz_1.23.0.tgz(r-4.5-any)RepViz_1.23.0.tgz(r-4.4-any)RepViz_1.23.0.tgz(r-4.3-any)
RepViz_1.23.0.tar.gz(r-4.5-noble)RepViz_1.23.0.tar.gz(r-4.4-noble)
RepViz_1.23.0.tgz(r-4.4-emscripten)RepViz_1.23.0.tgz(r-4.3-emscripten)
RepViz.pdf |RepViz.html✨
RepViz/json (API)
NEWS
# Install 'RepViz' in R: |
install.packages('RepViz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RepViz-1.23.0(bioc 3.21)RepViz-1.22.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
workflowstepvisualizationsequencingchipseqatacseqsoftwarecoveragegenomicvariation
Last updated 3 months agofrom:76973d5698. Checks:8 ERROR. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | FAIL | Jan 29 2025 |
R-4.5-win | ERROR | Jan 29 2025 |
R-4.5-mac | ERROR | Jan 29 2025 |
R-4.5-linux | ERROR | Jan 29 2025 |
R-4.4-win | ERROR | Jan 29 2025 |
R-4.4-mac | ERROR | Jan 29 2025 |
R-4.3-win | ERROR | Jan 29 2025 |
R-4.3-mac | ERROR | Jan 29 2025 |
Exports:RepViz
Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrdigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRhtslibrlangRsamtoolsRSQLiteS4VectorssnowstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrxml2XVector
Readme and manuals
Help Manual
Help page | Topics |
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Plot a genomic region | RepViz |