Package: RedisParam 1.15.0

Martin Morgan

RedisParam: Provide a 'redis' back-end for BiocParallel

This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.

Authors:Martin Morgan [aut, cre], Jiefei Wang [aut]

RedisParam_1.15.0.tar.gz
RedisParam_1.15.0.zip(r-4.7-any)RedisParam_1.15.0.zip(r-4.6-any)RedisParam_1.15.0.zip(r-4.5-any)
RedisParam_1.15.0.tgz(r-4.6-any)RedisParam_1.15.0.tgz(r-4.5-any)
RedisParam_1.15.0.tar.gz(r-4.7-any)RedisParam_1.15.0.tar.gz(r-4.6-any)
RedisParam_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RedisParam/json (API)

# Install 'RedisParam' in R:
install.packages('RedisParam', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:RedisParam-1.15.0(bioc 3.24)RedisParam-1.14.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure

4.73 score 18 scripts 362 downloads 15 exports 15 dependencies

Last updated from:703ab8ea37. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING174
linux-develNOTE272
source / vignettesOK198
linux-releaseNOTE231
macos-releaseNOTE136
macos-oldrelNOTE87
windows-develNOTE142
windows-releaseNOTE138
windows-oldrelNOTE152
wasm-releaseOK111

Exports:bpbackendbpisupbplog<-bpstartbpstopbpstopallbpworkersRedisParamrpaliverphostrpisworkerrppasswordrpportrpstopallrpworkers

Dependencies:BHBiocParallelcodetoolscpp11digestformatRfutile.loggerfutile.optionslambda.rloggerR6reduxsnowstorrwithr

RedisParam for Developers
Introduction | General design principles | Data structure in Redis | Workflow | Manager | Submit a task to Redis | Receive a result from Redis | Worker | Receive a task from Redis | Send a result to Redis | Session information
Rendered fromRedisParamDeveloperGuide.Rmdusingknitr::rmarkdown

Last update: 2022-06-08
Started: 2022-06-08

Using RedisParam
Getting started | Use | Manager and workers from a single R session | Independently-managed workers | Session info
Rendered fromRedisParamUserGuide.Rmdusingknitr::rmarkdown

Last update: 2022-06-08
Started: 2022-06-08

Readme and manuals

Help Manual

Help pageTopics
Deprecated functions in the RedisParam packagebpstopall
Enable redis-based parallel evaluation in BiocParallelbpbackend,RedisParam-method bpisup,RedisParam-method bplog<-,RedisParam,logical-method bpstart,RedisParam-method bpstop,RedisParam-method bpworkers,RedisParam-method RedisParam rpalive rphost rpisworker rppassword rpport rpstopall rpworkers