Package: RedisParam 1.9.0

Martin Morgan

RedisParam: Provide a 'redis' back-end for BiocParallel

This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.

Authors:Martin Morgan [aut, cre], Jiefei Wang [aut]

RedisParam_1.9.0.tar.gz
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RedisParam_1.9.0.tgz(r-4.4-any)RedisParam_1.9.0.tgz(r-4.3-any)
RedisParam_1.9.0.tar.gz(r-4.5-noble)RedisParam_1.9.0.tar.gz(r-4.4-noble)
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RedisParam.pdf |RedisParam.html
RedisParam/json (API)
NEWS

# Install 'RedisParam' in R:
install.packages('RedisParam', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:RedisParam-1.9.0(bioc 3.21)RedisParam-1.8.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure

4.53 score 17 scripts 128 downloads 15 exports 14 dependencies

Last updated 2 months agofrom:ce2bc7462b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winOKDec 19 2024
R-4.5-linuxOKDec 19 2024
R-4.4-winOKDec 19 2024
R-4.4-macOKDec 19 2024
R-4.3-winOKDec 19 2024
R-4.3-macOKDec 19 2024

Exports:bpbackendbpisupbplog<-bpstartbpstopbpstopallbpworkersRedisParamrpaliverphostrpisworkerrppasswordrpportrpstopallrpworkers

Dependencies:BHBiocParallelcodetoolscpp11digestformatRfutile.loggerfutile.optionslambda.rR6reduxsnowstorrwithr

RedisParam for Developers

Rendered fromRedisParamDeveloperGuide.Rmdusingknitr::rmarkdownon Dec 19 2024.

Last update: 2022-06-08
Started: 2022-06-08

Using RedisParam

Rendered fromRedisParamUserGuide.Rmdusingknitr::rmarkdownon Dec 19 2024.

Last update: 2022-06-08
Started: 2022-06-08

Readme and manuals

Help Manual

Help pageTopics
Deprecated functions in the RedisParam packagebpstopall
Enable redis-based parallel evaluation in BiocParallelbpbackend,RedisParam-method bpisup,RedisParam-method bplog<-,RedisParam,logical-method bpstart,RedisParam-method bpstop,RedisParam-method bpworkers,RedisParam-method RedisParam rpalive rphost rpisworker rppassword rpport rpstopall rpworkers