Package: RedeR 3.1.0
Mauro Castro
RedeR: Interactive visualization and manipulation of nested networks
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.
Authors:
RedeR_3.1.0.tar.gz
RedeR_3.1.0.zip(r-4.5)RedeR_3.1.0.zip(r-4.4)RedeR_3.1.0.zip(r-4.3)
RedeR_3.1.0.tgz(r-4.4-any)RedeR_3.1.0.tgz(r-4.3-any)
RedeR_3.1.0.tar.gz(r-4.5-noble)RedeR_3.1.0.tar.gz(r-4.4-noble)
RedeR_3.1.0.tgz(r-4.4-emscripten)RedeR_3.1.0.tgz(r-4.3-emscripten)
RedeR.pdf |RedeR.html✨
RedeR/json (API)
NEWS
| # Install 'RedeR' in R: |
| install.packages('RedeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RedeR-3.1.0(bioc 3.20)RedeR-3.0.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:f181d9726b
Exports:addEdgeBetweenContainersaddEdgesaddGraphaddGraphToRedeRaddLegend.coloraddLegend.shapeaddLegend.sizeaddLegendToRedeRaddNodesatt.addeatt.addvatt.mapeatt.mapvatt.seteatt.setvcalldceadeleteEdgesdeleteNodesdeleteSelectedEdgesdeleteSelectedNodesdeSelectEdgesdeSelectGraphdeSelectNodesexitdexitRedeRgetContainerComponetsgetEdgeIDsgetEdgesgetGraphgetGraphFromRedeRgetNodeIDsgetNodesgetSourceEdgeIDsgetTargetEdgeIDsgtoy.rmmergeNodesmergeOutEdgesnesthcnestNodespingpingRedeRRedPortrelaxrelaxRedeRresetdresetRedeRselectAllEdgesselectAllNodesselectEdgesselectGraphselectNodessetArrowDirectionstartRedeRsubgupdateContainerSizeupdateCoordXYupdateGraphupdateLayoutFromRedeRversion
Dependencies:clicolorspacecpp11farverglueigraphlabelinglatticelifecyclemagrittrMatrixmunsellpkgconfigR6RColorBrewerrlangscalesvctrsviridisLite
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| addEdges | addEdges addEdges,character-method addEdges,data.frame-method |
| Adding 'igraph' objects to RedeR | addGraph addGraph,RedPort-method |
| Adding 'igraph' objects to RedeR | addGraphToRedeR |
| Adding graph legends to the RedeR app | addLegendToRedeR |
| addNodes | addNodes addNodes,character-method |
| Call RedeR app from R | calld calld,RedPort-method |
| deleteEdges | deleteEdges deleteEdges,character-method deleteEdges,data.frame-method |
| deleteNodes | deleteNodes deleteNodes,character-method |
| Deprecated functions | addEdgeBetweenContainers addLegend.color addLegend.shape addLegend.size att.mape cea deleteSelectedEdges deleteSelectedNodes Deprecated deSelectEdges deSelectGraph deSelectNodes getContainerComponets getEdgeIDs getEdges getNodeIDs getNodes getSourceEdgeIDs getTargetEdgeIDs gtoy.rm mergeNodes nesthc selectAllEdges selectAllNodes selectGraph setArrowDirection updateContainerSize updateCoordXY updateGraph |
| Exit the RedeR R-to-Java interface | exitd exitd,RedPort-method |
| Exit the RedeR R-to-Java interface | exitRedeR |
| Get graphs from RedeR | getGraph getGraph,RedPort-method |
| Get graphs from RedeR | getGraphFromRedeR |
| mergeOutEdges | mergeOutEdges mergeOutEdges,numeric_Or_missing-method |
| nestNodes | nestNodes nestNodes,character-method |
| Ping RedeR app | ping ping,RedPort-method |
| Ping RedeR app | pingRedeR |
| Pre-processed igraph object for RedeR case studies. | hs.inter RedeR-data1 |
| Pre-processed dataset for RedeR case studies. | ER.limma RedeR-data2 |
| Constructor of RedPort-class objects | RedPort |
| RedPort: An S4 class for RedeR graphics | RedPort-class |
| Relax | relax relax,RedPort-method |
| Relax | relaxRedeR |
| Reset RedeR app | resetd resetd,RedPort-method |
| Reset RedeR app | resetRedeR |
| selectEdges | selectEdges selectEdges,character-method selectEdges,data.frame-method |
| selectNodes | selectNodes selectNodes,character-method |
| Start RedeR app from R | startRedeR |
| Subgraph of a graph | subg |
| Transforming edge and vertex attributes | att.adde att.addv att.mapv att.sete att.setv transform.attributes |
| Update graph layout | updateLayoutFromRedeR |
| Version | version version,RedPort-method |
