Introduction | read.LC480 | read.qPCR | read.taqman | qPCRBatch
Package: ReadqPCR 1.59.0
James Perkins
ReadqPCR: Read qPCR data
The package provides functions to read raw RT-qPCR data of different platforms.
Authors:
ReadqPCR_1.59.0.tar.gz
ReadqPCR_1.59.0.zip(r-4.7)ReadqPCR_1.59.0.zip(r-4.6)ReadqPCR_1.59.0.zip(r-4.5)
ReadqPCR_1.59.0.tgz(r-4.6-any)ReadqPCR_1.59.0.tgz(r-4.5-any)
ReadqPCR_1.59.0.tar.gz(r-4.7-any)ReadqPCR_1.59.0.tar.gz(r-4.6-any)
ReadqPCR_1.59.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ReadqPCR/json (API)
| # Install 'ReadqPCR' in R: |
| install.packages('ReadqPCR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:ReadqPCR-1.59.0(bioc 3.24)ReadqPCR-1.58.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
dataimportmicrotitreplateassaygeneexpressionqpcr
Last updated from:71b6b63fe9. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 138 | ||
| linux-devel-x86_64 | OK | 318 | ||
| source / vignettes | OK | 219 | ||
| linux-release-x86_64 | OK | 176 | ||
| macos-release-arm64 | OK | 100 | ||
| macos-oldrel-arm64 | OK | 105 | ||
| windows-devel | OK | 73 | ||
| windows-release | OK | 72 | ||
| windows-oldrel | OK | 90 | ||
| wasm-release | OK | 114 |
Exports:checkValidqPCRFilenamecheckValidTaqmanFilenameseffseffs<-exprs.well.orderexprs.well.order<-mergeqpcR2CyclesSetread.LC480read.LC480SampleInforead.qPCRread.taqmanse.effsse.effs<-
Dependencies:BiobaseBiocGenericsgenerics
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Read qPCR data | ReadqPCR-package ReadqPCR |
| Class CyclesSet | class:CyclesSet CyclesSet CyclesSet-class exprs,CyclesSet-method exprs<-,CyclesSet-method |
| Generic Function for Merging eSet and AnnotatedDataFrame | merge merge,AnnotatedDataFrame,eSet-method merge,eSet,AnnotatedDataFrame-method merge-methods |
| Transform a dataset from qpcR Package into CyclesSet | qpcR2CyclesSet |
| Class qPCRBatch | class:qPCRBatch effs effs,qPCRBatch-method effs<- effs<-,qPCRBatch-method exprs,qPCRBatch-method exprs.well.order exprs.well.order,qPCRBatch-method exprs.well.order<- exprs.well.order<-,qPCRBatch-method exprs<-,qPCRBatch-method qPCRBatch qPCRBatch-class qSet se.effs se.effs,qPCRBatch-method se.effs<- se.effs<-,qPCRBatch-method se.exprs,qPCRBatch-method se.exprs<-,qPCRBatch-method |
| Read in raw qPCR data of Light Cycler 480 | read.LC480 |
| Read sample information data of a qPCR experiment from Light Cycler 480 | read.LC480SampleInfo |
| Read user formatted qPCR data and produce a qPCRBatch | checkValidqPCRFilename read.qPCR read_qPCRBatch |
| Read Taqman qPCR data and produce a qPCRBatch | checkValidTaqmanFilenames read.taqman read_TaqBatch |
