Package: ReactomePA 1.57.0

Guangchuang Yu

ReactomePA: Reactome Pathway Analysis

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization. This package is not affiliated with the Reactome team.

Authors:Guangchuang Yu [aut, cre], Vladislav Petyuk [ctb]

ReactomePA_1.57.0.tar.gz
ReactomePA_1.57.0.zip(r-4.7)ReactomePA_1.57.0.zip(r-4.6)ReactomePA_1.57.0.zip(r-4.5)
ReactomePA_1.57.0.tgz(r-4.6-any)ReactomePA_1.57.0.tgz(r-4.5-any)
ReactomePA_1.57.0.tar.gz(r-4.7-any)ReactomePA_1.57.0.tar.gz(r-4.6-any)
ReactomePA_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ReactomePA/json (API)
NEWS

# Install 'ReactomePA' in R:
install.packages('ReactomePA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guangchuangyu/reactomepa/issues

On BioConductor:ReactomePA-1.57.0(bioc 3.24)ReactomePA-1.56.0(bioc 3.23)

pathwaysvisualizationannotationmultiplecomparisongenesetenrichmentreactomeenrichment-analysisreactome-pathway-analysisreactomepa

12.48 score 45 stars 9 packages 2.1k scripts 5.8k downloads 171 mentions 12 exports 123 dependencies

Last updated from:d04e108b02. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR263
linux-devel-x86_64OK418
source / vignettesOK322
linux-release-x86_64OK539
macos-release-arm64OK246
macos-oldrel-arm64OK208
windows-develOK747
windows-releaseOK299
windows-oldrelOK552
wasm-releaseOK224

Exports:cnetplotdotplotemapplotenrichPathwaygeneIDgeneInCategorygseaplotgsePathwaygson_ReactomeheatplotridgeplotviewPathway

Dependencies:AnnotationDbiapeaplotaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcliclustercpp11crayoncurlDBIdigestdir.expiryDOSEdplyrenrichitenrichplotevaluatefarverfastmapfilelockfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeglueGO.dbGOSemSimgraphgraphitegraphlayoutsgridExtragridGraphicsgsongtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmeopensslpatchworkpillarpkgconfigplyrpngpolyclippurrrR6rappdirsRColorBrewerRcppRcppArmadilloreactome.dbreshape2rlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfostringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotweenrutf8vctrsviridisviridisLitewithrxfunXVectoryamlyulab.utils

An R package for Reactome Pathway Analysis

Guangchuang Yu

Rendered fromReactomePA.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-12-07
Started: 2015-06-29