Package: ReactomeGraph4R 1.15.0

Chi-Lam Poon

ReactomeGraph4R: Interface for the Reactome Graph Database

Pathways, reactions, and biological entities in Reactome knowledge are systematically represented as an ordered network. Instances are represented as nodes and relationships between instances as edges; they are all stored in the Reactome Graph Database. This package serves as an interface to query the interconnected data from a local Neo4j database, with the aim of minimizing the usage of Neo4j Cypher queries.

Authors:Chi-Lam Poon [aut, cre], Reactome [cph]

ReactomeGraph4R_1.15.0.tar.gz
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ReactomeGraph4R.pdf |ReactomeGraph4R.html✨
ReactomeGraph4R/json (API)
NEWS

# Install 'ReactomeGraph4R' in R:
install.packages('ReactomeGraph4R', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/reactome/reactomegraph4r/issues

On BioConductor:ReactomeGraph4R-1.15.0(bioc 3.21)ReactomeGraph4R-1.14.0(bioc 3.20)

dataimportpathwaysreactomenetworkgraphandnetwork

5.26 score 6 stars 6 scripts 115 downloads 12 exports 63 dependencies

Last updated 3 months agofrom:af9bdb6ea1. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 30 2024
R-4.5-winOKDec 30 2024
R-4.5-linuxOKDec 30 2024
R-4.4-winOKDec 30 2024
R-4.4-macOKDec 30 2024
R-4.3-winOKDec 30 2024
R-4.3-macOKDec 30 2024

Exports:loginmatchDiseasesmatchHierarchymatchInteractorsmatchObjectmatchPaperObjectsmatchPErolesmatchPrecedingAndFollowingEventsmatchReactionsInPathwaymatchReferralsmultiObjectsunnestListCol

Dependencies:askpassattemptbase64encbslibcachemclicodetoolscommonmarkcpp11crayoncurldata.tabledigestdoParalleldplyrfansifastmapfontawesomeforeachfsgenericsgetPassgluehtmltoolshttpuvhttrigraphiteratorsjquerylibjsonlitelaterlatticelifecyclemagickmagrittrMatrixmemoisemimeneo4ropensslpillarpkgconfigpromisespurrrR6rappdirsRcppReactomeContentService4Rrlangrstudioapisassshinysourcetoolsstringistringrsystibbletidyrtidyselectutf8vctrswithrxtable

ReactomeGraph4R: an R Interface for the Reactome Graph Database

Chi-Lam Poon

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Dec 30 2024.

Last update: 2023-04-30
Started: 2021-02-21