Package: ReactomeGraph4R 1.15.0

Chi-Lam Poon

ReactomeGraph4R: Interface for the Reactome Graph Database

Pathways, reactions, and biological entities in Reactome knowledge are systematically represented as an ordered network. Instances are represented as nodes and relationships between instances as edges; they are all stored in the Reactome Graph Database. This package serves as an interface to query the interconnected data from a local Neo4j database, with the aim of minimizing the usage of Neo4j Cypher queries.

Authors:Chi-Lam Poon [aut, cre], Reactome [cph]

ReactomeGraph4R_1.15.0.tar.gz
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ReactomeGraph4R.pdf |ReactomeGraph4R.html✨
ReactomeGraph4R/json (API)
NEWS

# Install 'ReactomeGraph4R' in R:
install.packages('ReactomeGraph4R', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/reactome/reactomegraph4r/issues

On BioConductor:ReactomeGraph4R-1.15.0(bioc 3.21)ReactomeGraph4R-1.14.0(bioc 3.20)

dataimportpathwaysreactomenetworkgraphandnetwork

5.26 score 6 stars 6 scripts 115 downloads 12 exports 63 dependencies

Last updated 4 months agofrom:af9bdb6ea1. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-winOKJan 29 2025
R-4.5-macOKJan 29 2025
R-4.5-linuxOKJan 29 2025
R-4.4-winOKJan 29 2025
R-4.4-macOKJan 29 2025
R-4.3-winOKJan 29 2025
R-4.3-macOKJan 29 2025

Exports:loginmatchDiseasesmatchHierarchymatchInteractorsmatchObjectmatchPaperObjectsmatchPErolesmatchPrecedingAndFollowingEventsmatchReactionsInPathwaymatchReferralsmultiObjectsunnestListCol

Dependencies:askpassattemptbase64encbslibcachemclicodetoolscommonmarkcpp11crayoncurldata.tabledigestdoParalleldplyrfansifastmapfontawesomeforeachfsgenericsgetPassgluehtmltoolshttpuvhttrigraphiteratorsjquerylibjsonlitelaterlatticelifecyclemagickmagrittrMatrixmemoisemimeneo4ropensslpillarpkgconfigpromisespurrrR6rappdirsRcppReactomeContentService4Rrlangrstudioapisassshinysourcetoolsstringistringrsystibbletidyrtidyselectutf8vctrswithrxtable

ReactomeGraph4R: an R Interface for the Reactome Graph Database

Chi-Lam Poon

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Jan 29 2025.

Last update: 2023-04-30
Started: 2021-02-21