Package: ReactomeContentService4R 1.15.0
Chi-Lam Poon
ReactomeContentService4R: Interface for the Reactome Content Service
Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.
Authors:
ReactomeContentService4R_1.15.0.tar.gz
ReactomeContentService4R_1.15.0.zip(r-4.5)ReactomeContentService4R_1.15.0.zip(r-4.4)ReactomeContentService4R_1.15.0.zip(r-4.3)
ReactomeContentService4R_1.15.0.tgz(r-4.4-any)ReactomeContentService4R_1.15.0.tgz(r-4.3-any)
ReactomeContentService4R_1.15.0.tar.gz(r-4.5-noble)ReactomeContentService4R_1.15.0.tar.gz(r-4.4-noble)
ReactomeContentService4R_1.15.0.tgz(r-4.4-emscripten)ReactomeContentService4R_1.15.0.tgz(r-4.3-emscripten)
ReactomeContentService4R.pdf |ReactomeContentService4R.html✨
ReactomeContentService4R/json (API)
NEWS
| # Install 'ReactomeContentService4R' in R: |
| install.packages('ReactomeContentService4R', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/reactome/reactomecontentservice4r/issues
On BioConductor:ReactomeContentService4R-1.15.0(bioc 3.21)ReactomeContentService4R-1.13.0(bioc 3.20)
Last updated 23 days agofrom:667d43876a. Checks:OK: 1 ERROR: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | ERROR | Oct 31 2024 |
| R-4.5-linux | ERROR | Oct 31 2024 |
| R-4.4-win | ERROR | Oct 31 2024 |
| R-4.4-mac | ERROR | Oct 31 2024 |
| R-4.3-win | ERROR | Oct 31 2024 |
| R-4.3-mac | ERROR | Oct 31 2024 |
Exports:discoverevent2IdsexportEventFileexportImagegetEntitiesgetEventsHierarchygetOrthologygetParticipantsgetPathwaysgetPersongetSchemaClassgetSpecieslistSearchItemsmap2Eventsmap2RefEntitiesquerysearchQueryspellCheck
Dependencies:askpasscodetoolscurldata.tabledoParallelforeachhttriteratorsjsonlitemagickmagrittrmimeopensslR6Rcppsys
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Search engines discovery schema | discover |
| File exporter | exportEventFile |
| Image exporter | exportImage |
| PhysicalEntity queries | getEntities |
| EventsHierarchy queries | getEventsHierarchy |
| Orthology related queries | getOrthology |
| Participants related queries | getParticipants |
| Pathway related queries | getPathways |
| Person queries | getPerson |
| Schema class queries | getSchemaClass |
| Species queries | getSpecies |
| List filter items | listSearchItems |
| Non-Reactome id mappings | event2Ids map2Events map2RefEntities nonReactomeId |
| Common data retrieval | query |
| Search query | searchQuery |
| Spell-check suggestions for a given query | spellCheck |
