Package: Rbec 1.21.0

Pengfan Zhang

Rbec: Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

Authors:Pengfan Zhang [aut, cre]

Rbec_1.21.0.tar.gz
Rbec_1.21.0.zip(r-4.7)Rbec_1.21.0.zip(r-4.6)Rbec_1.21.0.zip(r-4.5)
Rbec_1.21.0.tgz(r-4.6-x86_64)Rbec_1.21.0.tgz(r-4.5-x86_64)
Rbec_1.21.0.tar.gz(r-4.7-x86_64)Rbec_1.21.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Rbec/json (API)

# Install 'Rbec' in R:

install.packages('Rbec', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:Rbec-1.21.0(bioc 3.24)Rbec-1.20.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencing microbialstrain microbiome cpp

4.00 score 2 scripts 2 exports 84 dependencies

Last updated from:9c8c685c42. Checks:1 NOTE, 5 FAIL, 8 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	209
linux-devel-arm64	FAIL	170
linux-devel-x86_64	OK	404
source / vignettes	OK	292
linux-release-arm64	FAIL	174
linux-release-x86_64	OK	429
macos-release-arm64	FAIL	105
macos-release-x86_64	OK	445
macos-oldrel-arm64	FAIL	87
macos-oldrel-x86_64	OK	479
windows-devel	OK	328
windows-release	OK	328
windows-oldrel	OK	322
wasm-release	FAIL	198