Package: Rbec 1.15.0

Pengfan Zhang

Rbec: Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

Authors:Pengfan Zhang [aut, cre]

Rbec_1.15.0.tar.gz
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Rbec_1.15.0.tgz(r-4.4-x86_64)Rbec_1.15.0.tgz(r-4.3-x86_64)
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Rbec.pdf |Rbec.html✨
Rbec/json (API)

# Install 'Rbec' in R:

install.packages('Rbec', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:Rbec-1.15.0(bioc 3.21)Rbec-1.14.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencing microbialstrain microbiome cpp

4.00 score 1 scripts 187 downloads 2 exports 97 dependencies

Last updated 2 months agofrom:baf2f918b2. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 19 2024
R-4.5-win-x86_64	OK	Dec 19 2024
R-4.5-linux-x86_64	OK	Dec 19 2024
R-4.4-win-x86_64	OK	Dec 19 2024
R-4.4-mac-x86_64	OK	Dec 19 2024
R-4.3-win-x86_64	OK	Dec 19 2024
R-4.3-mac-x86_64	OK	Dec 19 2024