Package: Rbec 1.13.0
Pengfan Zhang
Rbec: Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.
Authors:
Rbec_1.13.0.tar.gz
Rbec_1.13.0.zip(r-4.5)Rbec_1.13.0.zip(r-4.4)Rbec_1.13.0.zip(r-4.3)
Rbec_1.13.0.tgz(r-4.4-x86_64)Rbec_1.13.0.tgz(r-4.3-x86_64)
Rbec_1.13.0.tar.gz(r-4.5-noble)Rbec_1.13.0.tar.gz(r-4.4-noble)
Rbec.pdf |Rbec.html✨
Rbec/json (API)
| # Install 'Rbec' in R: |
| install.packages('Rbec', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Rbec-1.13.0(bioc 3.20)Rbec-1.12.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:ae702683cb
Exports:Contam_detectRbec
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsclicliprcodetoolscolorspacecpp11crayoncurldada2DelayedArraydeldirdoParallelfansifarverforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehmshttrhwriterinterpIRangesisobanditeratorsjpegjsonlitelabelinglambda.rlatticelatticeExtralifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigplyrpngprettyunitsprogresspwalignR6RColorBrewerRcppRcppEigenRcppParallelreadrreshape2RhtslibrlangRsamtoolsS4ArraysS4VectorsscalesShortReadsnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXVectorzlibbioc
