Package: RTCA 1.57.0

Jitao David Zhang

RTCA: Open-source toolkit to analyse data from xCELLigence System (RTCA)

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Authors:Jitao David Zhang

RTCA_1.57.0.tar.gz
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RTCA.pdf |RTCA.html✨
RTCA/json (API)

# Install 'RTCA' in R:

install.packages('RTCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:RTCA-1.57.0(bioc 3.20)RTCA-1.56.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

38 exports 6.20 score 4 dependencies 516 mentions

Last updated 2 months agofrom:bd4a00f218

Exports:actionTrack actionTrack<-addAction alphaNames alphaNames2Pos combineRTCA controlView derivativeTransform expID expID<-factor2numeric getAction interpolationTransform nearestTimeIndex orderAction parseRTCA plateView plot plotGridEffect ratioTransform relevels repairAlphaName reset rgrTransform rmAction rowcol2pos sliceRTCA smoothTransform spectramaxImport startTime startTime<-timeline timeline<-timepoints timepoints<-timeUnit timeUnit<-updateAction

Dependencies:Biobase BiocGenerics gtools RColorBrewer

Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package

Rendered fromaboutRTCA.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-11-01
Started: 2013-11-01

RTCAtransformation: Discussion of transformation methods of RTCA data

Rendered fromRTCAtransformation.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Auxilliary functions for experiments with microtitre plates	alphaNames alphaNames2Pos repairAlphaName rowcol2pos
Combine a list of RTCA objects	combineRTCA
PLOT CONTROL WELLS IN RTCA DATA	controlView
DERIVATIVE TRANSFORM OF RTCA OBJECT	derivativeTransform
FACTOR UNITILITIES	factor2numeric relevels
TRANSFORM RTCA DATA WITH INTERPOLATION	interpolationTransform
GET INDEX FOR NEAREST TIME	nearestTimeIndex
PARSE RTCA OUTPUT FILE	parseRTCA
PLATE VIEW OF RTCA DATA	plateView
PLOT GRID EFFECT OF RTCA	plotGridEffect
RATIO TRANSFORMATION OF RTCA DATA	ratioTransform
TRANSFORM RTCA DATA INTO RELATIVE GROWTH RATE	rgrTransform
Class "RTCA"	addAction,RTCA,numeric,character-method derivativeTransform,RTCA-method expID expID,RTCA-method expID<- expID<-,RTCA-method getAction,RTCA,numeric-method interpolationTransform,RTCA-method plot,RTCA-method plotRTCA,RTCA-method ratioTransform,RTCA-method rgrTransform,RTCA-method rmAction,RTCA,numeric-method RTCA-class RTCAtimeline,RTCA-method RTCAtimeline<-,RTCA-method show,RTCA-method smoothTransform,RTCA,ANY-method smoothTransform,RTCA,missing-method time,RTCA-method timeline timeline,RTCA-method timeline<- timeline<-,RTCA-method timepoints timepoints,RTCA-method timepoints<- timepoints<-,RTCA-method updateAction,RTCA,numeric,character-method
Class "RTCAtimeline"	actionTrack actionTrack,RTCAtimeline-method actionTrack<- actionTrack<-,RTCAtimeline,data.frame-method addAction addAction,RTCAtimeline,numeric,character-method getAction getAction,RTCAtimeline,numeric-method orderAction orderAction,RTCAtimeline-method reset reset,RTCAtimeline-method rmAction rmAction,RTCAtimeline,numeric-method RTCAtimeline-class startTime startTime,RTCAtimeline-method startTime<- startTime<-,RTCAtimeline,POSIXct-method timeUnit timeUnit,RTCAtimeline-method timeUnit<- timeUnit<-,RTCAtimeline,character-method updateAction updateAction,RTCAtimeline,numeric,character-method
SLICE RTCA OBJECT WITH TIME	sliceRTCA
SMOOTH TRANSFORM OF RTCA OBJECT	smoothTransform
Import output files from Spectramax spectrophotometer	spectramaxImport