Package: RTCA 1.59.0
Jitao David Zhang
RTCA: Open-source toolkit to analyse data from xCELLigence System (RTCA)
Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.
Authors:
RTCA_1.59.0.tar.gz
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RTCA_1.59.0.tgz(r-4.4-any)RTCA_1.59.0.tgz(r-4.3-any)
RTCA_1.59.0.tar.gz(r-4.5-noble)RTCA_1.59.0.tar.gz(r-4.4-noble)
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RTCA.pdf |RTCA.html✨
RTCA/json (API)
| # Install 'RTCA' in R: |
| install.packages('RTCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RTCA-1.59.0(bioc 3.21)RTCA-1.58.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologycellbasedassaysinfrastructurevisualizationtimecourse
Last updated 23 days agofrom:1c8301c86a. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | WARNING | Oct 31 2024 |
| R-4.5-linux | WARNING | Oct 31 2024 |
| R-4.4-win | WARNING | Oct 31 2024 |
| R-4.4-mac | WARNING | Oct 31 2024 |
| R-4.3-win | WARNING | Oct 31 2024 |
| R-4.3-mac | WARNING | Oct 31 2024 |
Exports:actionTrackactionTrack<-addActionalphaNamesalphaNames2PoscombineRTCAcontrolViewderivativeTransformexpIDexpID<-factor2numericgetActioninterpolationTransformnearestTimeIndexorderActionparseRTCAplateViewplotplotGridEffectratioTransformrelevelsrepairAlphaNameresetrgrTransformrmActionrowcol2possliceRTCAsmoothTransformspectramaxImportstartTimestartTime<-timelinetimeline<-timepointstimepoints<-timeUnittimeUnit<-updateAction
Dependencies:BiobaseBiocGenericsgtoolsRColorBrewer
Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package
Rendered fromaboutRTCA.Rnwusingutils::Sweaveon Oct 31 2024.Last update: 2013-11-01
Started: 2013-11-01
RTCAtransformation: Discussion of transformation methods of RTCA data
Rendered fromRTCAtransformation.Rnwusingutils::Sweaveon Oct 31 2024.Last update: 2013-11-01
Started: 2013-11-01
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Auxilliary functions for experiments with microtitre plates | alphaNames alphaNames2Pos repairAlphaName rowcol2pos |
| Combine a list of RTCA objects | combineRTCA |
| PLOT CONTROL WELLS IN RTCA DATA | controlView |
| DERIVATIVE TRANSFORM OF RTCA OBJECT | derivativeTransform |
| FACTOR UNITILITIES | factor2numeric relevels |
| TRANSFORM RTCA DATA WITH INTERPOLATION | interpolationTransform |
| GET INDEX FOR NEAREST TIME | nearestTimeIndex |
| PARSE RTCA OUTPUT FILE | parseRTCA |
| PLATE VIEW OF RTCA DATA | plateView |
| PLOT GRID EFFECT OF RTCA | plotGridEffect |
| RATIO TRANSFORMATION OF RTCA DATA | ratioTransform |
| TRANSFORM RTCA DATA INTO RELATIVE GROWTH RATE | rgrTransform |
| Class "RTCA" | addAction,RTCA,numeric,character-method derivativeTransform,RTCA-method expID expID,RTCA-method expID<- expID<-,RTCA-method getAction,RTCA,numeric-method interpolationTransform,RTCA-method plot,RTCA-method plotRTCA,RTCA-method ratioTransform,RTCA-method rgrTransform,RTCA-method rmAction,RTCA,numeric-method RTCA-class RTCAtimeline,RTCA-method RTCAtimeline<-,RTCA-method show,RTCA-method smoothTransform,RTCA,ANY-method smoothTransform,RTCA,missing-method time,RTCA-method timeline timeline,RTCA-method timeline<- timeline<-,RTCA-method timepoints timepoints,RTCA-method timepoints<- timepoints<-,RTCA-method updateAction,RTCA,numeric,character-method |
| Class "RTCAtimeline" | actionTrack actionTrack,RTCAtimeline-method actionTrack<- actionTrack<-,RTCAtimeline,data.frame-method addAction addAction,RTCAtimeline,numeric,character-method getAction getAction,RTCAtimeline,numeric-method orderAction orderAction,RTCAtimeline-method reset reset,RTCAtimeline-method rmAction rmAction,RTCAtimeline,numeric-method RTCAtimeline-class startTime startTime,RTCAtimeline-method startTime<- startTime<-,RTCAtimeline,POSIXct-method timeUnit timeUnit,RTCAtimeline-method timeUnit<- timeUnit<-,RTCAtimeline,character-method updateAction updateAction,RTCAtimeline,numeric,character-method |
| SLICE RTCA OBJECT WITH TIME | sliceRTCA |
| SMOOTH TRANSFORM OF RTCA OBJECT | smoothTransform |
| Import output files from Spectramax spectrophotometer | spectramaxImport |
