Package: RSVSim 1.45.0

Christoph Bartenhagen

RSVSim: RSVSim: an R/Bioconductor package for the simulation of structural variations

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Authors:Christoph Bartenhagen

RSVSim_1.45.0.tar.gz
RSVSim_1.45.0.zip(r-4.5)RSVSim_1.45.0.zip(r-4.4)RSVSim_1.45.0.zip(r-4.3)
RSVSim_1.45.0.tgz(r-4.4-any)RSVSim_1.45.0.tgz(r-4.3-any)
RSVSim_1.45.0.tar.gz(r-4.5-noble)RSVSim_1.45.0.tar.gz(r-4.4-noble)
RSVSim_1.45.0.tgz(r-4.4-emscripten)RSVSim_1.45.0.tgz(r-4.3-emscripten)
RSVSim.pdf |RSVSim.html✨
RSVSim/json (API)

Peer review:

On BioConductor:RSVSim-1.45.0(bioc 3.20)RSVSim-1.44.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 0.91 score 54 dependencies 13 mentions

Last updated 2 months agofrom:8366fd90fe

Exports:compareSVestimateSVSizessimulateSV

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopscodetoolscpp11crayoncurlDelayedArraydeldirformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrhwriterinterpIRangesjpegjsonlitelambda.rlatticelatticeExtraMASSMatrixMatrixGenericsmatrixStatsmimeopensslpngpwalignR6RColorBrewerRcppRcppEigenRhtslibRsamtoolsS4ArraysS4VectorsShortReadsnowSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc