Package: ROTS 1.99.11
Tomi Suomi
ROTS: Reproducibility-Optimized Test Statistic
Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.
Authors:
ROTS_1.99.11.tar.gz
ROTS_1.99.11.zip(r-4.5)ROTS_1.99.11.zip(r-4.4)ROTS_1.99.11.zip(r-4.3)
ROTS_1.99.11.tgz(r-4.5-x86_64)ROTS_1.99.11.tgz(r-4.5-arm64)ROTS_1.99.11.tgz(r-4.4-x86_64)ROTS_1.99.11.tgz(r-4.4-arm64)ROTS_1.99.11.tgz(r-4.3-x86_64)ROTS_1.99.11.tgz(r-4.3-arm64)
ROTS_1.99.11.tar.gz(r-4.5-noble)ROTS_1.99.11.tar.gz(r-4.4-noble)
ROTS_1.99.11.tgz(r-4.4-emscripten)ROTS_1.99.11.tgz(r-4.3-emscripten)
ROTS.pdf |ROTS.html✨
ROTS/json (API)
NEWS
| # Install 'ROTS' in R: |
| install.packages('ROTS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- affySpikeIn - Gene expression data from the Affymetrix spike-in experiment
- affySpikeIn.L - Gene expression data from the Affymetrix spike-in experiment
- affySpikeIn.gnames - Gene expression data from the Affymetrix spike-in experiment
- spikedgene - Gene expression data from the Affymetrix spike-in experiment
- upsSpikeIn - Protein expression data from the CPTAC Technology Assessment
On BioConductor:ROTS-1.99.11(bioc 3.21)ROTS-1.34.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaregeneexpressiondifferentialexpressionmicroarrayrnaseqproteomicsimmunooncologycpp
Last updated 2 months agofrom:2d56249fda. Checks:12 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 26 2025 |
| R-4.5-win-x86_64 | OK | Mar 26 2025 |
| R-4.5-mac-x86_64 | OK | Mar 26 2025 |
| R-4.5-mac-aarch64 | OK | Mar 26 2025 |
| R-4.5-linux-x86_64 | OK | Mar 26 2025 |
| R-4.4-win-x86_64 | OK | Mar 26 2025 |
| R-4.4-mac-x86_64 | OK | Mar 26 2025 |
| R-4.4-mac-aarch64 | OK | Mar 26 2025 |
| R-4.4-linux-x86_64 | OK | Mar 26 2025 |
| R-4.3-win-x86_64 | OK | Mar 26 2025 |
| R-4.3-mac-x86_64 | OK | Mar 26 2025 |
| R-4.3-mac-aarch64 | OK | Mar 26 2025 |
Exports:lmeROTSlmROTSresultsROTS
Dependencies:BHBiobaseBiocGenericsBiocParallelbootcodetoolscpp11formatRfutile.loggerfutile.optionsgenericslambda.rlatticelme4MASSMatrixminqanlmenloptrrbibutilsRcppRcppEigenRdpackreformulassnow
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene expression data from the Affymetrix spike-in experiment | affySpikeIn affySpikeIn.gnames affySpikeIn.L spikedgene |
| Reproducibility-Optimized Test Statistic (ROTS) | lmeROTS |
| Reproducibility-Optimized Test Statistic (ROTS) | lmROTS |
| Plotting of a regROTS object | plot.regROTS |
| Plotting of a ROTS object | plot.ROTS |
| Gathering results from a regROTS object | results |
| Reproducibility-Optimized Test Statistic (ROTS) | ROTS-package print.ROTS ROTS |
| Summary of a regROTS object | summary.regROTS |
| Summary of a ROTS object | summary.ROTS |
| Protein expression data from the CPTAC Technology Assessment (Study 6) | upsSpikeIn |
