Package: RNAmodR.RiboMethSeq 1.19.0
RNAmodR.RiboMethSeq: Detection of 2'-O methylations by RiboMethSeq
RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Authors:
RNAmodR.RiboMethSeq_1.19.0.tar.gz
RNAmodR.RiboMethSeq_1.19.0.zip(r-4.5)RNAmodR.RiboMethSeq_1.19.0.zip(r-4.4)RNAmodR.RiboMethSeq_1.19.0.zip(r-4.3)
RNAmodR.RiboMethSeq_1.19.0.tgz(r-4.4-any)RNAmodR.RiboMethSeq_1.19.0.tgz(r-4.3-any)
RNAmodR.RiboMethSeq_1.19.0.tar.gz(r-4.5-noble)RNAmodR.RiboMethSeq_1.19.0.tar.gz(r-4.4-noble)
RNAmodR.RiboMethSeq_1.19.0.tgz(r-4.4-emscripten)RNAmodR.RiboMethSeq_1.19.0.tgz(r-4.3-emscripten)
RNAmodR.RiboMethSeq.pdf |RNAmodR.RiboMethSeq.html✨
RNAmodR.RiboMethSeq/json (API)
NEWS
# Install 'RNAmodR.RiboMethSeq' in R: |
install.packages('RNAmodR.RiboMethSeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/felixernst/rnamodr.ribomethseq/issues
- msrms - Example data in the RNAmodR.RiboMethSeq package
On BioConductor:RNAmodR.RiboMethSeq-1.19.0(bioc 3.20)RNAmodR.RiboMethSeq-1.18.0(bioc 3.19)
Last updated 2 months agofrom:25b69c10fd
Exports:aggregateDatafindModgetDataTrackModRiboMethSeqModSetRiboMethSeqplotDataplotDataByCoordsettings<-
Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcaToolscheckmatecliclustercodetoolscolorRampscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegplotsgridExtragtablegtoolsGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeModstringsmunsellnlmennetopensslpillarpkgconfigplogrplyrpngprettyunitsprogressProtGenericspurrrR6rappdirsRColorBrewerRcppRcppEigenRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownRNAmodRROCRrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakerUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
ModRiboMethSeq class to analyze RiboMethSeq data | ModRiboMethSeq ModRiboMethSeq-class ModSetRiboMethSeq ModSetRiboMethSeq-class RiboMethSeq |
Functions for ModRiboMethSeq | aggregate aggregateData,ModRiboMethSeq-method findMod,ModRiboMethSeq-method getDataTrack,ModRiboMethSeq-method modify ModRiboMethSeq-functions plotData plotData,ModRiboMethSeq-method plotData,ModSetRiboMethSeq-method plotDataByCoord plotDataByCoord,ModRiboMethSeq,GRanges-method plotDataByCoord,ModSetRiboMethSeq,GRanges-method settings settings<-,ModRiboMethSeq-method |
RNAmodR.RiboMethSeq | RNAmodR.RiboMethSeq |
Example data in the RNAmodR.RiboMethSeq package | msrms RNAmodR.RiboMethSeq-datasets |