Package: RNAAgeCalc 1.25.0

Xu Ren

RNAAgeCalc: A multi-tissue transcriptional age calculator

It has been shown that both DNA methylation and RNA transcription are linked to chronological age and age related diseases. Several estimators have been developed to predict human aging from DNA level and RNA level. Most of the human transcriptional age predictor are based on microarray data and limited to only a few tissues. To date, transcriptional studies on aging using RNASeq data from different human tissues is limited. The aim of this package is to provide a tool for across-tissue and tissue-specific transcriptional age calculation based on GTEx RNASeq data.

Authors:Xu Ren [aut, cre], Pei Fen Kuan [aut]

RNAAgeCalc_1.25.0.tar.gz
RNAAgeCalc_1.25.0.zip(r-4.7)RNAAgeCalc_1.25.0.zip(r-4.6)RNAAgeCalc_1.25.0.zip(r-4.5)
RNAAgeCalc_1.25.0.tgz(r-4.6-any)RNAAgeCalc_1.25.0.tgz(r-4.5-any)
RNAAgeCalc_1.25.0.tar.gz(r-4.7-any)RNAAgeCalc_1.25.0.tar.gz(r-4.6-any)
RNAAgeCalc_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RNAAgeCalc/json (API)
NEWS

# Install 'RNAAgeCalc' in R:
install.packages('RNAAgeCalc', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/reese3928/rnaagecalc/issues

Datasets:
  • fpkm - An example of FPKM data
  • rawcount - An example of RNASeq counts data

On BioConductor:RNAAgeCalc-1.25.0(bioc 3.24)RNAAgeCalc-1.24.0(bioc 3.23)

rnaseqgeneexpressionbiological-ageelastic-netgene-expressiongenotype-tissue-expressionpredictionregularized-regressionrna-seq

5.46 score 9 stars 16 scripts 418 downloads 2 mentions 4 exports 155 dependencies

Last updated from:d39b87dacb. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE253
linux-devel-x86_64NOTE508
source / vignettesOK340
linux-release-x86_64NOTE485
macos-release-arm64NOTE253
macos-oldrel-arm64NOTE287
windows-develNOTE394
windows-releaseNOTE403
windows-oldrelNOTE360
wasm-releaseOK206

Exports:count2FPKMmakeplotpredict_agepredict_age_fromse

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomebslibbumphuntercachemcheckmatecigarilloclicliprclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayderfinderderfinderHelperdigestdoRNGdownloaderdplyrevaluatefarverfastmapfontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicFilesGenomicRangesGEOqueryggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2imputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslorg.Hs.eg.dbpillarpkgconfigplyrpngprettyunitsprogresspurrrqvalueR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrrecountrentrezreshape2restfulrRhtslibrjsonrlangrmarkdownrngtoolsrpartRsamtoolsRSQLiterstudioapirtracklayerrvestS4ArraysS4VectorsS7sassscalesselectrSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8VariantAnnotationvctrsviridisLitevroomwithrxfunXMLxml2XVectoryaml

RNAAgeCalc: A multi-tissue transcriptional age calculator

Xu Ren and Pei Fen Kuan

Rendered fromRNAAge-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-06-24
Started: 2020-02-13