Package: RITAN 1.29.0

Michael Zimmermann

RITAN: Rapid Integration of Term Annotation and Network resources

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Authors:Michael Zimmermann [aut, cre]

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Peer review:

On BioConductor:RITAN-1.29.0(bioc 3.20)RITAN-1.28.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

16 exports 0.91 score 134 dependencies 5 mentions

Last updated 2 months agofrom:b1d9bc3768

Exports:as.graphcheck_any_net_inputcheck_net_inputenrichment_symbolsgeneset_overlapicon_testload_geneset_symbolsnetwork_overlapreadGMTreadSIFresource_reduceshow_active_genesets_histterm_enrichmentterm_enrichment_by_subsetwrite_simple_tablewriteGMT

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBgeeDBBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcaToolschronclicodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydigestdplyrdynamicTreeCutEnsDb.Hsapiens.v86ensembldbevaluateexpmfansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2glueGO.dbgplotsgraphgridExtragsubfngtablegtoolshashhighrhttrigraphIRangesisobandjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelazyevallifecyclelinkcommmagrittrMASSMatrixMatrixGenericsmatrixStatsMCLmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrplotrixplyrpngProtGenericsprotopurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreshape2restfulrRhtslibRITANdatarjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraySparseMsqldfSTRINGdbstringistringrSummarizedExperimentsystibbletidyrtidyselecttopGOUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryamlzlibbioc