Package: RCM 1.21.0
![](https://r-universe.dev/static/nobody.jpg)
Stijn Hawinkel
RCM: Fit row-column association models with the negative binomial distribution for the microbiome
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
Authors:
RCM_1.21.0.tar.gz
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RCM.pdf |RCM.html✨
RCM/json (API)
NEWS
# Install 'RCM' in R: |
install.packages('RCM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/centerforstatistics-ugent/rcm/issues
- Zeller - Microbiomes of colorectal cancer patients and healthy controls
On BioConductor:RCM-1.21.0(bioc 3.20)RCM-1.20.0(bioc 3.19)
Last updated 2 months agofrom:192270fcb3
Exports:addOrthProjectioncheckAliasextractCoordgetDevianceResinertialiksplotRespFunRCMRCM_NBresidualPlot
Dependencies:ade4alabamaapeaskpassBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdigestedgeRfansifarverforeachGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclelimmalocfitmagrittrMASSMatrixmgcvmimemulttestmunsellnleqslvnlmenumDerivopensslpermutephyloseqpillarpixmappkgconfigplyrquadprogquantmodR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4VectorsscalesspstatmodstringistringrsurvivalsystensortibbletseriesTTRUCSC.utilsutf8vctrsveganVGAMviridisLitewithrxtsXVectorzlibbioczoo