Package: QuartPAC 1.39.0

Gregory Ryslik

QuartPAC: Identification of mutational clusters in protein quaternary structures

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Authors:Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

QuartPAC_1.39.0.tar.gz
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QuartPAC.pdf |QuartPAC.html✨
QuartPAC/json (API)
NEWS

# Install 'QuartPAC' in R:
install.packages('QuartPAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:QuartPAC-1.39.0(bioc 3.21)QuartPAC-1.38.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clusteringproteomicssomaticmutation

3.48 score 2 scripts 197 downloads 1 mentions 3 exports 47 dependencies

Last updated 23 days agofrom:d448196a0f. Checks:OK: 1 NOTE: 4 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 31 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macERROROct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macERROROct 31 2024

Exports:getMutationsmakeAlignedSuperStructurequartCluster

Dependencies:askpassBiobaseBiocGenericsBiostringsclicodetoolscombinatcpp11crayoncurldata.tableforeachgdataGenomeInfoDbGenomeInfoDbDataglueGraphPACgtoolshttrigraphiPACIRangesiteratorsjsonlitelatticelifecyclemagrittrMASSMatrixmimemulttestopensslpkgconfigpwalignR6rlangRMallowS4Vectorsscatterplot3dSpacePACsurvivalsysTSPUCSC.utilsvctrsXVectorzlibbioc

SpacePAC: Identifying mutational clusters in 3D protein space using simulation

Rendered fromQuartPAC.Rnwusingutils::Sweaveon Oct 31 2024.

Last update: 2017-07-13
Started: 2014-11-13