Package: QuartPAC 1.39.0

Gregory Ryslik

QuartPAC: Identification of mutational clusters in protein quaternary structures

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Authors:Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

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QuartPAC.pdf |QuartPAC.html✨
QuartPAC/json (API)
NEWS

# Install 'QuartPAC' in R:
install.packages('QuartPAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:QuartPAC-1.39.0(bioc 3.21)QuartPAC-1.38.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clusteringproteomicssomaticmutation

3.48 score 2 scripts 218 downloads 1 mentions 3 exports 47 dependencies

Last updated 4 months agofrom:d448196a0f. Checks:1 OK, 4 NOTE, 3 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-winNOTEFeb 22 2025
R-4.5-macERRORFeb 22 2025
R-4.5-linuxNOTEFeb 22 2025
R-4.4-winNOTEFeb 22 2025
R-4.4-macERRORFeb 22 2025
R-4.3-winNOTEFeb 22 2025
R-4.3-macERRORFeb 22 2025

Exports:getMutationsmakeAlignedSuperStructurequartCluster

Dependencies:askpassBiobaseBiocGenericsBiostringsclicodetoolscombinatcpp11crayoncurldata.tableforeachgdatagenericsGenomeInfoDbGenomeInfoDbDataglueGraphPACgtoolshttrigraphiPACIRangesiteratorsjsonlitelatticelifecyclemagrittrMASSMatrixmimemulttestopensslpkgconfigpwalignR6rlangRMallowS4Vectorsscatterplot3dSpacePACsurvivalsysTSPUCSC.utilsvctrsXVector

SpacePAC: Identifying mutational clusters in 3D protein space using simulation

Rendered fromQuartPAC.Rnwusingutils::Sweaveon Feb 22 2025.

Last update: 2017-07-13
Started: 2014-11-13