Package: Qtlizer 1.21.0

Matthias Munz

Qtlizer: Comprehensive QTL annotation of GWAS results

This R package provides access to the Qtlizer web server. Qtlizer annotates lists of common small variants (mainly SNPs) and genes in humans with associated changes in gene expression using the most comprehensive database of published quantitative trait loci (QTLs).

Authors:Matthias Munz [aut, cre], Julia Remes [aut]

Qtlizer_1.21.0.tar.gz
Qtlizer_1.21.0.zip(r-4.5)Qtlizer_1.21.0.zip(r-4.4)Qtlizer_1.21.0.zip(r-4.3)
Qtlizer_1.21.0.tgz(r-4.5-any)Qtlizer_1.21.0.tgz(r-4.4-any)Qtlizer_1.21.0.tgz(r-4.3-any)
Qtlizer_1.21.0.tar.gz(r-4.5-noble)Qtlizer_1.21.0.tar.gz(r-4.4-noble)
Qtlizer_1.21.0.tgz(r-4.4-emscripten)Qtlizer_1.21.0.tgz(r-4.3-emscripten)
Qtlizer.pdf |Qtlizer.html
Qtlizer/json (API)
NEWS

# Install 'Qtlizer' in R:
install.packages('Qtlizer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/matmu/qtlizer/issues

On BioConductor:Qtlizer-1.21.0(bioc 3.21)Qtlizer-1.20.0(bioc 3.20)

genomewideassociationsnpgeneticslinkagedisequilibriumeqtlgwasvariant-annotation

5.38 score 3 stars 2 scripts 176 downloads 4 mentions 1 exports 18 dependencies

Last updated 3 months agofrom:c7fbceb4ee. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-winNOTEJan 29 2025
R-4.5-macNOTEJan 29 2025
R-4.5-linuxNOTEJan 29 2025
R-4.4-winNOTEJan 29 2025
R-4.4-macNOTEJan 29 2025
R-4.3-winNOTEJan 29 2025
R-4.3-macNOTEJan 29 2025

Exports:get_qtls

Dependencies:askpassBiocGenericscurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR6S4VectorsstringisysUCSC.utilsXVector

Qtlizer: comprehensive QTL annotation of GWAS results

Rendered fromQtlizer.Rmdusingknitr::rmarkdownon Jan 29 2025.

Last update: 2020-05-11
Started: 2019-06-26