Package: PrInCE 1.21.0
PrInCE: Predicting Interactomes from Co-Elution
PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.
Authors:
PrInCE_1.21.0.tar.gz
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PrInCE_1.21.0.tgz(r-4.4-any)PrInCE_1.21.0.tgz(r-4.3-any)
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PrInCE.pdf |PrInCE.html✨
PrInCE/json (API)
# Install 'PrInCE' in R: |
install.packages('PrInCE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fosterlab/prince/issues
- gold_standard - Reference set of human protein complexes
- kristensen - Interactome of HeLa cells
- kristensen_gaussians - Fitted Gaussian mixture models for the 'kristensen' dataset
- scott - Cytoplasmic interactome of Jurkat T cells during apoptosis
- scott_gaussians - Fitted Gaussian mixture models for the 'scott' dataset
On BioConductor:PrInCE-1.21.0(bioc 3.20)PrInCE-1.20.0(bioc 3.19)
Last updated 2 months agofrom:85124c52ca
Exports:adjacency_matrix_from_data_frameadjacency_matrix_from_listbuild_gaussianscalculate_autocorrelationcalculate_featurescalculate_precisioncheck_gaussianschoose_gaussiansclean_profileclean_profilesco_apexconcatenate_featuresdetect_complexesfilter_profilesfit_curvefit_gaussiansimpute_neighborsis_unweightedis_weightedmake_feature_from_data_framemake_feature_from_expressionmake_initial_conditionsmake_labelsmatch_matrix_dimensionspredict_ensemblepredict_interactionsPrInCEreplace_missing_datathreshold_precision
Dependencies:abindaffyaffyioAnnotationFilteraskpassbackportsbase64encBHbiglmBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocParallelbslibcachemcheckmatecliclueclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDEoptimRdigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforecastforeignformatRFormulafracdifffsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevalLiblineaRlifecyclelimmalmtestmagrittrMALDIquantMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMsCoreUtilsMSnbaseMultiAssayExperimentmunsellmzIDmzRnaivebayesncdf4nlmennetopensslpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchpurrrQFeaturesquadprogquantmodR6rangerrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreshape2Rhdf5librlangrmarkdownrobustbaserpartrstudioapiS4ArraysS4VectorssassscalessnowSparseArrayspeedglmstatmodstringistringrSummarizedExperimentsystestertibbletidyrtidyselecttimeDatetinytextseriesTTRUCSC.utilsurcautf8vctrsviridisviridisLitevsnwithrxfunXMLxtsXVectoryamlzlibbioczoo