Package: PolySTest 1.1.0
PolySTest: PolySTest: Detection of differentially regulated features. Combined statistical testing for data with few replicates and missing values
The complexity of high-throughput quantitative omics experiments often leads to low replicates numbers and many missing values. We implemented a new test to simultaneously consider missing values and quantitative changes, which we combined with well-performing statistical tests for high confidence detection of differentially regulated features. The package contains functions to run the test and to visualize the results.
Authors:
PolySTest_1.1.0.tar.gz
PolySTest_1.1.0.zip(r-4.5)PolySTest_1.1.0.zip(r-4.4)
PolySTest_1.1.0.tgz(r-4.4-any)
PolySTest_1.1.0.tar.gz(r-4.5-noble)PolySTest_1.1.0.tar.gz(r-4.4-noble)
PolySTest_1.1.0.tgz(r-4.4-emscripten)
PolySTest.pdf |PolySTest.html✨
PolySTest/json (API)
NEWS
# Install 'PolySTest' in R: |
install.packages('PolySTest', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/computproteomics/polystest/issues
- liver_example - Example data set liver_example for PolySTest
On BioConductor:PolySTest-1.1.0(bioc 3.21)PolySTest-0.99.6(bioc 3.20)
massspectrometryproteomicssoftwaredifferentialexpression
Last updated 29 days agofrom:43fe0683a5. Checks:OK: 1 NOTE: 2 ERROR: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 23 2024 |
R-4.5-win | ERROR | Nov 23 2024 |
R-4.5-linux | NOTE | Nov 23 2024 |
R-4.4-win | ERROR | Nov 23 2024 |
R-4.4-mac | NOTE | Nov 23 2024 |
Exports:check_for_polystestcheck_stat_namescreate_pairwise_comparisonsFindFCandQlimFindFCandQlimAlternativeget_numthreadslimma_pairedlimma_unpairedMissingStatsMissingStatsDesignMissValPDistrperm_unpairedpermtest_pairedplotExpressionplotHeatmaplyplotPvalueDistrplotRegNumberplotUpsetplotVolcanoPolySTest_pairedPolySTest_unpairedrp_unpairedRPStatsset_mfrowStatsForPermutTestttest_pairedttest_unpairedupdate_conditions_with_lcs
Dependencies:abindaskpassassertthatbase64encBiobaseBiocGenericsbitopsbslibcacachemcallrcaToolscirclizecliclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDelayedArraydendextenddigestdplyreggevaluatefansifarverfastmapfdrtoolfontawesomeforeachfsgclusgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2GlobalOptionsgluegplotsgridExtragtablegtoolsheatmaplyhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpermutepillarpkgconfigplotlyplyrprocessxpromisespspurrrqapqvalueR6rappdirsRColorBrewerRcppregistryreshape2rlangrmarkdownS4ArraysS4VectorssassscalesseriationshapeshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexTSPUCSC.utilsUpSetRutf8vctrsveganviridisviridisLitewebshotwithrxfunxtableXVectoryamlzlibbioc