Package: Pedixplorer 1.1.0

Louis Le Nézet

Pedixplorer: Pedigree Functions

Routines to handle family data with a Pedigree object. The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for Pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the Pedigree object with various criteria, and kinship for the X chromosome.

Authors:Louis Le Nézet [aut, cre], Jason Sinnwell [aut], Terry Therneau [aut], Daniel Schaid [ctb], Elizabeth Atkinson [ctb], Louis Le Nezet [ctb]

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Bug tracker:https://github.com/louislelezet/pedixplorer/issues

On BioConductor:Pedixplorer-1.1.0(bioc 3.20)Pedixplorer-1.0.0(bioc 3.19)

bioconductor-package

97 exports 1.16 score 59 dependencies

Last updated 2 months agofrom:569e94fa11

Exports:affectedaffected<-alignancestorsanchor_to_factoras.data.frameas.listauto_hintavailavail<-best_hintbit_sizeborderborder<-circfuncodedadiddadid<-descendantsfamidfamid<-family_checkfillfill<-find_avail_affectedfind_avail_noninformfind_unavailablefix_parentsgenerate_aff_indsgenerate_bordergenerate_colorsgenerate_fillhintsHintshints<-horderhorder<-ibd_matrixidid<-id1id2is_disconnectedis_founderis_informativeis_parentis_valid_scalesisinfisinf<-kinkin<-kindepthkinshipmake_famidmcolsmcols<-min_dist_infmomidmomid<-na_to_lengthnorm_pednorm_relnum_childpedPedped_to_legdfped_to_plotdfped<-Pedigreeplotplot_fromdfpolyfunpolygonsrelRelrel_code_to_factorrel<-scalesScalesscales<-sexsex_to_factorsex<-showshrinkspousespouse<-statusstatus<-subsetsummaryunrelatedupd_famid_idusefuluseful_indsuseful<-vect_to_binary

Dependencies:BiocGenericsbriocallrclicolorspacecpp11crayondescdiffobjdigestdplyrevaluatefansifarverfsgenericsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgbuildpkgconfigpkgloadplyrpraiseprocessxpspurrrquadprogR6RColorBrewerRcpprematch2rlangrprojrootS4Vectorsscalesstringistringrtestthattibbletidyrtidyselectutf8vctrsviridisLitewaldowithr