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PathNet.Rnwusingutils::SweavePackage: PathNet 1.53.0
Ludwig Geistlinger
PathNet: An R package for pathway analysis using topological information
PathNet uses topological information present in pathways and differential expression levels of genes (obtained from microarray experiment) to identify pathways that are 1) significantly enriched and 2) associated with each other in the context of differential expression. The algorithm is described in: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source Code for Biology and Medicine 2012 Sep 24;7(1):10.
Authors:
PathNet_1.53.0.tar.gz
PathNet_1.53.0.zip(r-4.7)PathNet_1.53.0.zip(r-4.6)PathNet_1.53.0.zip(r-4.5)
PathNet_1.53.0.tgz(r-4.6-any)PathNet_1.53.0.tgz(r-4.5-any)
PathNet_1.53.0.tar.gz(r-4.7-any)PathNet_1.53.0.tar.gz(r-4.6-any)
PathNet_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PathNet/json (API)
| # Install 'PathNet' in R: |
| install.packages('PathNet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PathNet-1.53.0(bioc 3.24)PathNet-1.52.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
pathwaysdifferentialexpressionmultiplecomparisonkeggnetworkenrichmentnetwork
Last updated from:6638bc0b05. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 136 | ||
| linux-devel-x86_64 | NOTE | 138 | ||
| source / vignettes | OK | 179 | ||
| linux-release-x86_64 | NOTE | 184 | ||
| macos-release-arm64 | NOTE | 139 | ||
| macos-oldrel-arm64 | NOTE | 101 | ||
| windows-devel | NOTE | 95 | ||
| windows-release | NOTE | 86 | ||
| windows-oldrel | NOTE | 81 | ||
| wasm-release | OK | 90 |
Exports:PathNet
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Enrichment and contextual analysis of KEGG pathways | PathNet |
