Package: PathNet 1.47.0

Ludwig Geistlinger

PathNet: An R package for pathway analysis using topological information

PathNet uses topological information present in pathways and differential expression levels of genes (obtained from microarray experiment) to identify pathways that are 1) significantly enriched and 2) associated with each other in the context of differential expression. The algorithm is described in: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

Authors:Bhaskar Dutta <[email protected]>, Anders Wallqvist <[email protected]>, and Jaques Reifman <[email protected]>

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PathNet.pdf |PathNet.html✨
PathNet/json (API)

# Install 'PathNet' in R:
install.packages('PathNet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:PathNet-1.47.0(bioc 3.21)PathNet-1.46.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

pathwaysdifferentialexpressionmultiplecomparisonkeggnetworkenrichmentnetwork

4.30 score 5 scripts 266 downloads 13 mentions 1 exports 0 dependencies

Last updated 4 months agofrom:08e4aa34d2. Checks:1 OK, 7 NOTE. Indexed: yes.

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Exports:PathNet

Dependencies:

PathNet

Rendered fromPathNet.Rnwusingutils::Sweaveon Jan 28 2025.

Last update: 2018-09-06
Started: 2013-01-15