Package: PROMISE 1.65.0

Stan Pounds

PROMISE: PRojection Onto the Most Interesting Statistical Evidence

A general tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables as described in Pounds et. al. (2009) Bioinformatics 25: 2013-2019

Authors:Stan Pounds <[email protected]>, Xueyuan Cao <[email protected]>

PROMISE_1.65.0.tar.gz
PROMISE_1.65.0.zip(r-4.7)PROMISE_1.65.0.zip(r-4.6)PROMISE_1.65.0.zip(r-4.5)
PROMISE_1.65.0.tgz(r-4.6-any)PROMISE_1.65.0.tgz(r-4.5-any)
PROMISE_1.65.0.tar.gz(r-4.7-any)PROMISE_1.65.0.tar.gz(r-4.6-any)
PROMISE_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PROMISE/json (API)

# Install 'PROMISE' in R:

install.packages('PROMISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

phPatt - Phenotype Pattern Definition Set
sampExprSet - An Example Expression Set
sampGeneSet - An Example Gene Set Collection

On BioConductor:PROMISE-1.65.0(bioc 3.24)PROMISE-1.64.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray onechannel multiplecomparison geneexpression

5.69 score 1 packages 81 scripts 111 mentions 5 exports 40 dependencies

Last updated from:1b4f939446. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	201
linux-devel-x86_64	NOTE	209
source / vignettes	OK	202
linux-release-x86_64	NOTE	246
macos-release-arm64	NOTE	152
macos-oldrel-arm64	NOTE	126
windows-devel	NOTE	129
windows-release	NOTE	129
windows-oldrel	NOTE	139
wasm-release	OK	126

Exports:avg.abs.genestat jung.rstat PROMISE promise.genestat spearman.rstat

Dependencies:annotate AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI fastmap generics glue graph GSEABase httr IRanges jsonlite KEGGREST lifecycle memoise mime openssl pkgconfig png R6 rlang RSQLite S4Vectors Seqinfo sys vctrs XML xtable XVector

An introduction to PROMISE

Introduction | Requirements | PROMISE Analysis

Rendered fromPROMISE.Rnwusingutils::Sweave

Last update: 2014-07-08
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
PRojection Onto the Most Interesting Statistical Evidence	PROMISE-package
Function to Compute Gene Set Statistics	avg.abs.genestat
Function to Compute Jung's Statistics	jung.rstat
Phenotype Pattern Definition Set	phPatt
PRojection onto the Most Interesting Statistical Evidence	PROMISE
Function to Calculate PROMISE Statistics	promise.genestat
PROMISE pattern	promise.pattern
An Example Expression Set	sampExprSet
An Example Gene Set Collection	sampGeneSet
Function to Calculate Spearman Correlation Statistics	spearman.rstat