Package: PING 2.51.0

Renan Sauteraud

PING: Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Authors:Xuekui Zhang <[email protected]>, Raphael Gottardo <[email protected]>, Sangsoon Woo <[email protected]>

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PING.pdf |PING.html✨
PING/json (API)
NEWS

# Install 'PING' in R:
install.packages('PING', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • gsl– GNU Scientific Library (GSL)

On BioConductor:PING-2.51.0(bioc 3.21)PING-2.50.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clusteringstatisticalmethodvisualizationsequencinggsl

4.00 score 7 scripts 259 downloads 36 mentions 16 exports 164 dependencies

Last updated 2 months agofrom:025f8b776b. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-win-x86_64WARNINGNov 30 2024
R-4.5-linux-x86_64WARNINGNov 30 2024
R-4.4-win-x86_64WARNINGNov 30 2024
R-4.4-mac-x86_64WARNINGNov 30 2024
R-4.4-mac-aarch64WARNINGNov 30 2024
R-4.3-win-x86_64WARNINGNov 30 2024
R-4.3-mac-x86_64WARNINGNov 30 2024
R-4.3-mac-aarch64WARNINGNov 30 2024

Exports:as.data.frameCoverageTrackdensitymakeGRangesOutputnewPingnewPingErrornewPingListNucleosomeTrackPINGplotplotSummarypostPINGRawReadsTracksegmentPINGshowsummary

Dependencies:abindAnnotationDbiAnnotationFilterashaskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdeSolvedichromatdigestdplyrensembldbevaluatefansifarverfastmapfdafdsfilelockFNNfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizhdrcdehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTkernlabKernSmoothknitrkslabelinglambda.rlatticelatticeExtralazyevallifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemulticoolmunsellmvtnormnlmennetopensslpcaPPPICSpillarpkgconfigplogrpngpracmaprettyunitsprogressProtGenericspurrrR6rainbowrappdirsRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc