Package: PING 2.49.0

Renan Sauteraud

PING: Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Authors:Xuekui Zhang <[email protected]>, Raphael Gottardo <[email protected]>, Sangsoon Woo <[email protected]>

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PING/json (API)
NEWS

# Install 'PING' in R:
install.packages('PING', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • gsl– GNU Scientific Library (GSL)

On BioConductor:PING-2.49.0(bioc 3.20)PING-2.48.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

16 exports 4.28 score 164 dependencies 36 mentions

Last updated 2 months agofrom:4eff825a5c

Exports:as.data.frameCoverageTrackdensitymakeGRangesOutputnewPingnewPingErrornewPingListNucleosomeTrackPINGplotplotSummarypostPINGRawReadsTracksegmentPINGshowsummary

Dependencies:abindAnnotationDbiAnnotationFilterashaskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdeSolvedichromatdigestdplyrensembldbevaluatefansifarverfastmapfdafdsfilelockFNNfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizhdrcdehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTkernlabKernSmoothknitrkslabelinglambda.rlatticelatticeExtralazyevallifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemulticoolmunsellmvtnormnlmennetopensslpcaPPPICSpillarpkgconfigplogrpngpracmaprettyunitsprogressProtGenericspurrrR6rainbowrappdirsRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc