Package: PECA 1.49.0
PECA: Probe-level Expression Change Averaging
Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.
Authors:
PECA_1.49.0.tar.gz
PECA_1.49.0.zip(r-4.7)PECA_1.49.0.zip(r-4.6)PECA_1.49.0.zip(r-4.5)
PECA_1.49.0.tgz(r-4.6-any)PECA_1.49.0.tgz(r-4.5-any)
PECA_1.49.0.tar.gz(r-4.7-any)PECA_1.49.0.tar.gz(r-4.6-any)
PECA_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PECA/json (API)
NEWS
| # Install 'PECA' in R: |
| install.packages('PECA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PECA-1.49.0(bioc 3.24)PECA-1.48.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareproteomicsmicroarraydifferentialexpressiongeneexpressionexonarraydifferentialsplicing
Last updated from:f9e612ca97. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 214 | ||
| linux-devel-x86_64 | NOTE | 315 | ||
| source / vignettes | OK | 347 | ||
| linux-release-x86_64 | NOTE | 296 | ||
| macos-release-arm64 | NOTE | 144 | ||
| macos-oldrel-arm64 | NOTE | 156 | ||
| windows-devel | NOTE | 178 | ||
| windows-release | NOTE | 205 | ||
| windows-oldrel | NOTE | 194 | ||
| wasm-release | OK | 189 |
Exports:PECA_AffyBatchPECA_CELPECA_dfPECA_tsvPECASI
Dependencies:affyaffyioannotateAnnotationDbiaroma.affymetrixaroma.apdaroma.corearoma.lightaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiocParallelBiostringsbitbit64blobbootcachemclicodetoolscpp11crayoncurlDBIdigestDNAcopyfastmapformatRfutile.loggerfutile.optionsfuturegenefiltergenericsglobalsgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalistenvlme4MASSMatrixMatrixGenericsmatrixStatsmemoisemimeminqanlmenloptropensslparallellypkgconfigpngpreprocessCorePSCBSR.cacheR.devicesR.filesetsR.hugeR.methodsS3R.ooR.rspR.utilsR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangROTSRSQLiteS4VectorsSeqinfosnowstatmodsurvivalsysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| PECA differential gene expression | PECA PECA_AffyBatch PECA_CEL PECA_df PECA_tsv |
| PECA splicing index | PECASI |
