Package: PECA 1.43.0
PECA: Probe-level Expression Change Averaging
Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.
Authors:
PECA_1.43.0.tar.gz
PECA_1.43.0.zip(r-4.5)PECA_1.43.0.zip(r-4.4)PECA_1.43.0.zip(r-4.3)
PECA_1.43.0.tgz(r-4.4-any)PECA_1.43.0.tgz(r-4.3-any)
PECA_1.43.0.tar.gz(r-4.5-noble)PECA_1.43.0.tar.gz(r-4.4-noble)
PECA_1.43.0.tgz(r-4.4-emscripten)PECA_1.43.0.tgz(r-4.3-emscripten)
PECA.pdf |PECA.html✨
PECA/json (API)
NEWS
# Install 'PECA' in R: |
install.packages('PECA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PECA-1.43.0(bioc 3.21)PECA-1.42.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareproteomicsmicroarraydifferentialexpressiongeneexpressionexonarraydifferentialsplicing
Last updated 2 months agofrom:a4a29d4311. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 03 2024 |
R-4.5-win | NOTE | Dec 03 2024 |
R-4.5-linux | NOTE | Dec 03 2024 |
R-4.4-win | NOTE | Dec 03 2024 |
R-4.4-mac | NOTE | Dec 03 2024 |
R-4.3-win | NOTE | Dec 03 2024 |
R-4.3-mac | NOTE | Dec 03 2024 |
Exports:PECA_AffyBatchPECA_CELPECA_dfPECA_tsvPECASI
Dependencies:affyaffyioannotateAnnotationDbiaroma.affymetrixaroma.apdaroma.corearoma.lightaskpassbase64encBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestDNAcopyfastmapfuturegenefiltergenericsGenomeInfoDbGenomeInfoDbDataglobalsgluehttrIRangesjsonliteKEGGRESTlatticelifecyclelimmalistenvMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslparallellypkgconfigplogrpngpreprocessCorePSCBSR.cacheR.devicesR.filesetsR.hugeR.methodsS3R.ooR.rspR.utilsR6RColorBrewerRcpprlangROTSRSQLiteS4VectorsstatmodsurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
PECA differential gene expression | PECA PECA_AffyBatch PECA_CEL PECA_df PECA_tsv |
PECA splicing index | PECASI |