Package: PECA 1.43.0

Tomi Suomi

PECA: Probe-level Expression Change Averaging

Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.

Authors:Tomi Suomi, Jukka Hiissa, Laura L. Elo

PECA_1.43.0.tar.gz
PECA_1.43.0.zip(r-4.5)PECA_1.43.0.zip(r-4.4)PECA_1.43.0.zip(r-4.3)
PECA_1.43.0.tgz(r-4.4-any)PECA_1.43.0.tgz(r-4.3-any)
PECA_1.43.0.tar.gz(r-4.5-noble)PECA_1.43.0.tar.gz(r-4.4-noble)
PECA_1.43.0.tgz(r-4.4-emscripten)PECA_1.43.0.tgz(r-4.3-emscripten)
PECA.pdf |PECA.html
PECA/json (API)
NEWS

# Install 'PECA' in R:
install.packages('PECA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:PECA-1.43.0(bioc 3.21)PECA-1.42.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareproteomicsmicroarraydifferentialexpressiongeneexpressionexonarraydifferentialsplicing

4.34 score 11 scripts 250 downloads 17 mentions 5 exports 92 dependencies

Last updated 2 months agofrom:a4a29d4311. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 02 2025
R-4.5-winNOTEJan 02 2025
R-4.5-linuxNOTEJan 02 2025
R-4.4-winNOTEJan 02 2025
R-4.4-macNOTEJan 03 2025
R-4.3-winNOTEJan 02 2025
R-4.3-macNOTEJan 03 2025

Exports:PECA_AffyBatchPECA_CELPECA_dfPECA_tsvPECASI

Dependencies:affyaffyioannotateAnnotationDbiaroma.affymetrixaroma.apdaroma.corearoma.lightaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiocParallelBiostringsbitbit64blobbootcachemclicodetoolscpp11crayoncurlDBIdigestDNAcopyfastmapformatRfutile.loggerfutile.optionsfuturegenefiltergenericsGenomeInfoDbGenomeInfoDbDataglobalsgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalistenvlme4MASSMatrixMatrixGenericsmatrixStatsmemoisemimeminqanlmenloptropensslparallellypkgconfigplogrpngpreprocessCorePSCBSR.cacheR.devicesR.filesetsR.hugeR.methodsS3R.ooR.rspR.utilsR6RColorBrewerRcppRcppEigenrlangROTSRSQLiteS4VectorssnowstatmodsurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc

PECA: Probe-level Expression Change Averaging

Rendered fromPECA.Rnwusingutils::Sweaveon Jan 02 2025.

Last update: 2015-06-08
Started: 2013-12-07

Readme and manuals

Help Manual

Help pageTopics
PECA differential gene expressionPECA PECA_AffyBatch PECA_CEL PECA_df PECA_tsv
PECA splicing indexPECASI