Package: PCAN 1.41.0

Matthew Page

PCAN: Phenotype Consensus ANalysis (PCAN)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Authors:Matthew Page and Patrice Godard

PCAN_1.41.0.tar.gz
PCAN_1.41.0.zip(r-4.7)PCAN_1.41.0.zip(r-4.6)PCAN_1.41.0.zip(r-4.5)
PCAN_1.41.0.tgz(r-4.6-any)PCAN_1.41.0.tgz(r-4.5-any)
PCAN_1.41.0.tar.gz(r-4.7-any)PCAN_1.41.0.tar.gz(r-4.6-any)
PCAN_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PCAN/json (API)

# Install 'PCAN' in R:
install.packages('PCAN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:PCAN-1.41.0(bioc 3.24)PCAN-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotationsequencinggeneticsfunctionalpredictionvariantannotationpathwaysnetwork

4.15 score 8 scripts 420 downloads 7 mentions 7 exports 9 dependencies

Last updated from:9293d51293. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR240
linux-devel-x86_64NOTE379
source / vignettesOK234
linux-release-x86_64NOTE351
macos-release-arm64NOTE230
macos-oldrel-arm64NOTE245
windows-develNOTE481
windows-releaseNOTE447
windows-oldrelNOTE353
wasm-releaseOK181

Exports:calcHpSimcompareHPSetscomputeHpIChpGeneHeatmaphpGeneListComphpSetCompBestMatchhpSetCompSummary

Dependencies:BHBiocParallelcodetoolscpp11formatRfutile.loggerfutile.optionslambda.rsnow

Assessing gene relevance for a set of phenotypes

Patrice Godard and Matt Page

Rendered fromPCAN.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2016-03-24
Started: 2016-03-17