Package: PCAN 1.35.0

Matthew Page

PCAN: Phenotype Consensus ANalysis (PCAN)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Authors:Matthew Page and Patrice Godard

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PCAN.pdf |PCAN.html✨
PCAN/json (API)

# Install 'PCAN' in R:
install.packages('PCAN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:PCAN-1.33.0(bioc 3.20)PCAN-1.32.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotationsequencinggeneticsfunctionalpredictionvariantannotationpathwaysnetwork

4.15 score 7 scripts 186 downloads 7 mentions 7 exports 9 dependencies

Last updated 23 days agofrom:71c448339f. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:calcHpSimcompareHPSetscomputeHpIChpGeneHeatmaphpGeneListComphpSetCompBestMatchhpSetCompSummary

Dependencies:BHBiocParallelcodetoolscpp11formatRfutile.loggerfutile.optionslambda.rsnow

Assessing gene relevance for a set of phenotypes

Patrice Godard and Matt Page

Rendered fromPCAN.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2016-03-24
Started: 2016-03-17