Introduction | Installation | PDseDataSet | pairadise method | Output | SessionInfo
Package: PAIRADISE 1.29.0
Qiang Hu
PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Authors:
PAIRADISE_1.29.0.tar.gz
PAIRADISE_1.29.0.zip(r-4.7)PAIRADISE_1.29.0.zip(r-4.6)PAIRADISE_1.29.0.zip(r-4.5)
PAIRADISE_1.29.0.tgz(r-4.6-any)PAIRADISE_1.29.0.tgz(r-4.5-any)
PAIRADISE_1.29.0.tar.gz(r-4.7-any)PAIRADISE_1.29.0.tar.gz(r-4.6-any)
PAIRADISE_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PAIRADISE/json (API)
| # Install 'PAIRADISE' in R: |
| install.packages('PAIRADISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- sample_dataset - Sample_dataset
- sample_dataset_CEU - Sample_dataset
- sample_dataset_LUSC - Sample_dataset
On BioConductor:PAIRADISE-1.29.0(bioc 3.24)PAIRADISE-1.28.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
rnaseqdifferentialexpressionalternativesplicingstatisticalmethodimmunooncology
Last updated from:b7bf738a29. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 199 | ||
| linux-devel-x86_64 | OK | 291 | ||
| source / vignettes | OK | 307 | ||
| linux-release-x86_64 | OK | 294 | ||
| macos-release-arm64 | OK | 140 | ||
| macos-oldrel-arm64 | OK | 133 | ||
| windows-devel | OK | 204 | ||
| windows-release | OK | 186 | ||
| windows-oldrel | OK | 186 | ||
| wasm-release | OK | 134 |
Exports:pairadisePDseDataSetPDseDataSetFromMatresults
Dependencies:abindBHBiobaseBiocGenericsBiocParallelcodetoolscpp11DelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomicRangesIRangeslambda.rlatticeMatrixMatrixGenericsmatrixStatsnloptrS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| PDseDataSet counts | counts |
| pairadise | pairadise |
| PAIRADISE Detecting allele-specific alternative splicing from population-scale RNA-seq data | PAIRADISE |
| PDseDataSet object and constuctor | PDseDataSet PDseDataSet-class |
| PDseDataSet from rMATs/PAIRADISE Mat format | PDseDataSetFromMat |
| Extract results for pairadise analysis | results |
| sample_dataset | sample_dataset sample_dataset_CEU sample_dataset_LUSC |
