Package: PAIRADISE 1.23.0

Qiang Hu

PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Authors:Levon Demirdjian, Ying Nian Wu, Yi Xing

PAIRADISE_1.23.0.tar.gz
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PAIRADISE.pdf |PAIRADISE.html✨
PAIRADISE/json (API)

# Install 'PAIRADISE' in R:
install.packages('PAIRADISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:PAIRADISE-1.23.0(bioc 3.21)PAIRADISE-1.22.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

rnaseqdifferentialexpressionalternativesplicingstatisticalmethodimmunooncology

3.30 score 7 scripts 220 downloads 4 exports 39 dependencies

Last updated 23 days agofrom:069378a3fa. Checks:OK: 4 WARNING: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macOKOct 31 2024

Exports:pairadisePDseDataSetPDseDataSetFromMatresults

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelcodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimenloptropensslR6S4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc

PAIRADISE

Qiang Hu

Rendered frompairadise.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2019-01-16
Started: 2018-11-08