Package: PADOG 1.49.0

Adi L. Tarca

PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

Authors:Adi Laurentiu Tarca <[email protected]>; Zhonghui Xu <[email protected]>

PADOG_1.49.0.tar.gz
PADOG_1.49.0.zip(r-4.5)PADOG_1.49.0.zip(r-4.4)PADOG_1.49.0.zip(r-4.3)
PADOG_1.49.0.tgz(r-4.4-any)PADOG_1.49.0.tgz(r-4.3-any)
PADOG_1.49.0.tar.gz(r-4.5-noble)PADOG_1.49.0.tar.gz(r-4.4-noble)
PADOG_1.49.0.tgz(r-4.4-emscripten)PADOG_1.49.0.tgz(r-4.3-emscripten)
PADOG.pdf |PADOG.html
PADOG/json (API)

# Install 'PADOG' in R:
install.packages('PADOG', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:PADOG-1.49.0(bioc 3.21)PADOG-1.48.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannel

5.30 score 2 packages 11 scripts 550 downloads 19 mentions 3 exports 54 dependencies

Last updated 1 months agofrom:624952a726. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTENov 29 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winNOTENov 29 2024
R-4.4-macNOTENov 29 2024
R-4.3-winNOTENov 29 2024
R-4.3-macNOTENov 29 2024

Exports:compPADOGfilteranotpadog

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDataglueGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGRESTlatticelifecyclelimmamemoisemimenlmeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangrngtoolsRSQLiteS4VectorsstatmodsysUCSC.utilsvctrsXVectorzlibbioc

PADOG

Rendered fromPADOG.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2023-11-04
Started: 2013-11-01