Package: PADOG 1.55.0
Adi L. Tarca
PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
Authors:
PADOG_1.55.0.tar.gz
PADOG_1.55.0.zip(r-4.7)PADOG_1.55.0.zip(r-4.6)PADOG_1.55.0.zip(r-4.5)
PADOG_1.55.0.tgz(r-4.6-any)PADOG_1.55.0.tgz(r-4.5-any)
PADOG_1.55.0.tar.gz(r-4.7-any)PADOG_1.55.0.tar.gz(r-4.6-any)
PADOG_1.55.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PADOG/json (API)
| # Install 'PADOG' in R: |
| install.packages('PADOG', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PADOG-1.55.0(bioc 3.24)PADOG-1.54.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannel
Last updated from:8d85cf2b04. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 210 | ||
| linux-devel-x86_64 | NOTE | 350 | ||
| source / vignettes | OK | 329 | ||
| linux-release-x86_64 | NOTE | 284 | ||
| macos-release-arm64 | NOTE | 201 | ||
| macos-oldrel-arm64 | NOTE | 164 | ||
| windows-devel | NOTE | 240 | ||
| windows-release | NOTE | 216 | ||
| windows-oldrel | NOTE | 230 | ||
| wasm-release | OK | 149 |
Exports:compPADOGfilteranotpadog
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsglueGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGRESTlatticelifecyclelimmamemoisemimenlmeopensslorg.Hs.eg.dbpkgconfigpngR6rlangrngtoolsRSQLiteS4VectorsSeqinfostatmodsysvctrsXVector
