Package: PADOG 1.49.4
Adi L. Tarca
PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
Authors:
PADOG_1.49.4.tar.gz
PADOG_1.49.4.zip(r-4.5)PADOG_1.49.4.zip(r-4.4)PADOG_1.49.4.zip(r-4.3)
PADOG_1.49.4.tgz(r-4.4-any)PADOG_1.49.4.tgz(r-4.3-any)
PADOG_1.49.4.tar.gz(r-4.5-noble)PADOG_1.49.4.tar.gz(r-4.4-noble)
PADOG_1.49.4.tgz(r-4.4-emscripten)PADOG_1.49.4.tgz(r-4.3-emscripten)
PADOG.pdf |PADOG.html✨
PADOG/json (API)
| # Install 'PADOG' in R: |
| install.packages('PADOG', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PADOG-1.49.2(bioc 3.21)PADOG-1.48.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannel
Last updated 4 days agofrom:46f8115799. Checks:1 OK, 6 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 18 2025 |
| R-4.5-win | NOTE | Jan 18 2025 |
| R-4.5-linux | NOTE | Jan 18 2025 |
| R-4.4-win | NOTE | Jan 18 2025 |
| R-4.4-mac | NOTE | Jan 18 2025 |
| R-4.3-win | NOTE | Jan 18 2025 |
| R-4.3-mac | NOTE | Jan 18 2025 |
Exports:compPADOGfilteranotpadog
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDataglueGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGRESTlatticelifecyclelimmamemoisemimenlmeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangrngtoolsRSQLiteS4VectorsstatmodsysUCSC.utilsvctrsXVector
