Package: PADOG 1.47.0

Adi L. Tarca

PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

Authors:Adi Laurentiu Tarca <[email protected]>; Zhonghui Xu <[email protected]>

PADOG_1.47.0.tar.gz
PADOG_1.47.0.zip(r-4.5)PADOG_1.47.0.zip(r-4.4)PADOG_1.47.0.zip(r-4.3)
PADOG_1.47.0.tgz(r-4.4-any)PADOG_1.47.0.tgz(r-4.3-any)
PADOG_1.47.0.tar.gz(r-4.5-noble)PADOG_1.47.0.tar.gz(r-4.4-noble)
PADOG_1.47.0.tgz(r-4.4-emscripten)PADOG_1.47.0.tgz(r-4.3-emscripten)
PADOG.pdf |PADOG.html✨
PADOG/json (API)

Peer review:

On BioConductor:PADOG-1.47.0(bioc 3.20)PADOG-1.46.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 1.51 score 53 dependencies 2 dependents 19 mentions

Last updated 2 months agofrom:d43e5b769f

Exports:compPADOGfilteranotpadog

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachGenomeInfoDbGenomeInfoDbDataglueGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGRESTlatticelifecyclelimmamemoisemimenlmeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangrngtoolsRSQLiteS4VectorsstatmodsysUCSC.utilsvctrsXVectorzlibbioc