Package: Oscope 1.35.0
Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Authors:
Oscope_1.35.0.tar.gz
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Oscope.pdf |Oscope.html✨
Oscope/json (API)
NEWS
# Install 'Oscope' in R: |
install.packages('Oscope', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- OscopeExampleData - Simulated gene level data set with 600 genes and 30 cells.
On BioConductor:Oscope-1.35.0(bioc 3.20)Oscope-1.34.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:31fb426f7e
Exports:AbsCorCalcMVFlagClusterFormatSineOutImpShiftNISFunNormForSineOpt2ShiftOscopeENIOscopeKMOscopeSinePermuCutPipeRPipeShiftCDFscanKSineFunSineOptim
Dependencies:BHBiocParallelbitopsblockmodelingbriocallrcaToolscliclustercodetoolscpp11crayondescdiffobjdigestEBSeqevaluatefansiformatRfsfutile.loggerfutile.optionsgluegplotsgtoolsjsonliteKernSmoothlambda.rlatticelifecyclemagrittrMatrixpillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6RcppRcppEigenrematch2rlangrprojrootsnowtestthattibbleutf8vctrswaldowithr