Package: OrderedList 1.79.0
Claudio Lottaz
OrderedList: Similarities of Ordered Gene Lists
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
Authors:
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OrderedList/json (API)
| # Install 'OrderedList' in R: |
| install.packages('OrderedList', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:OrderedList-1.77.0(bioc 3.20)OrderedList-1.76.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpressionmultiplecomparison
Last updated 23 days agofrom:febc9a9b08. Checks:ERROR: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Oct 30 2024 |
| R-4.5-win | WARNING | Oct 30 2024 |
| R-4.5-linux | WARNING | Oct 30 2024 |
| R-4.4-win | WARNING | Oct 30 2024 |
| R-4.4-mac | WARNING | Oct 30 2024 |
| R-4.3-win | WARNING | Oct 30 2024 |
| R-4.3-mac | WARNING | Oct 30 2024 |
Exports:check.test.argscompareListsgetOverlapOrderedListoverlapplot.listComparisonplot.listComparisonOverlapplot.OrderedListplot.shuffledRandomScoresprepareDatapreparePermutationsprint.listComparisonprint.listComparisonOverlapprint.OrderedListprint.shuffledRandomScoresscoreOrderComparisonscoreOrderComparisonBothscoreRankingsshuffledRandomScorestest.fctest.ttest.z
Dependencies:BiobaseBiocGenericstwilight
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compare Ordered Lists with Weighted Overlap Score | compareLists plot.listComparison print.listComparison |
| Extracting the Intersecting IDs From a listComparison Object | getOverlap plot.listComparisonOverlap print.listComparisonOverlap |
| Gene Expression and Clinical Information of Two Cancer Studies | OL.data |
| Three Examples of Class 'OrderedList' | OL.result |
| Detecting Similarities of Two Microarray Studies | OrderedList |
| Plotting Function for OrderedList Objects | plot.OrderedList |
| Combining Two Studies into an Expression Set | prepareData |
| Printing Function for OrderedList Objects | print.OrderedList |
