Package: OGRE 1.17.0

Sven Berres

OGRE: Calculate, visualize and analyse overlap between genomic regions

OGRE calculates overlap between user defined genomic region datasets. Any regions can be supplied i.e. genes, SNPs, or reads from sequencing experiments. Key numbers help analyse the extend of overlaps which can also be visualized at a genomic level.

Authors:Sven Berres [aut, cre], Jörg Gromoll [ctb], Marius Wöste [ctb], Sarah Sandmann [ctb], Sandra Laurentino [ctb]

OGRE_1.17.0.tar.gz
OGRE_1.17.0.zip(r-4.7)OGRE_1.17.0.zip(r-4.6)OGRE_1.17.0.zip(r-4.5)
OGRE_1.17.0.tgz(r-4.6-any)OGRE_1.17.0.tgz(r-4.5-any)
OGRE_1.17.0.tar.gz(r-4.7-any)OGRE_1.17.0.tar.gz(r-4.6-any)
OGRE_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OGRE/json (API)
NEWS

# Install 'OGRE' in R:
install.packages('OGRE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/svenbioinf/ogre/issues

On BioConductor:OGRE-1.17.0(bioc 3.24)OGRE-1.16.0(bioc 3.23)

softwareworkflowstepbiologicalquestionannotationmetagenomicsvisualizationsequencing

4.78 score 2 stars 4 scripts 314 downloads 19 exports 160 dependencies

Last updated from:5f45d91f63. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE230
linux-devel-x86_64OK585
source / vignettesOK352
linux-release-x86_64OK535
macos-release-arm64OK666
macos-oldrel-arm64OK413
windows-develOK439
windows-releaseOK434
windows-oldrelOK403
wasm-releaseOK160

Exports:addDataSetFromHubaddGRangescovPlotextendGRangesextractPromotersfOverlapsgvizPlotlistPredefinedDataSetsloadAnnotationsmakeExampleGRangesmakeExampleOGREDataSetOGREDataSetOGREDataSetFromDirplotHistreadDataSetFromFolderSHRECsubsetGRangessummarizeOverlapsumPlot

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassassertthatbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrDTensembldbevaluatefarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslotelpillarpkgconfigpngprettyunitsprogresspromisesProtGenericspurrrR6rappdirsRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinyBSshinydashboardshinyFilessnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisLitewithrxfunXMLxml2xtableXVectoryaml

The OGRE user guide

Sven Berres

Rendered fromOGRE.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-07-31
Started: 2021-11-18