Package: OCplus 1.81.0

Alexander Ploner

OCplus: Operating characteristics plus sample size and local fdr for microarray experiments

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Authors:Yudi Pawitan <[email protected]> and Alexander Ploner <[email protected]>

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OCplus.pdf |OCplus.html✨
OCplus/json (API)

# Install 'OCplus' in R:
install.packages('OCplus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:OCplus-1.81.0(bioc 3.21)OCplus-1.80.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpressionmultiplecomparison

4.08 score 2 scripts 323 downloads 6 mentions 49 exports 12 dependencies

Last updated 3 months agofrom:530dc282f7. Checks:3 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 14 2025
R-4.5-winNOTEJan 14 2025
R-4.5-linuxNOTEJan 14 2025
R-4.4-winNOTEJan 14 2025
R-4.4-macNOTEJan 14 2025
R-4.3-winOKJan 14 2025
R-4.3-macOKJan 14 2025

Exports:approx2daverage.fdrbrk2midCDFCDF.pairedCDFmixCDFmix.paireddf2vardgfreedmtdmt.paireddmtmixdmtmix.pairedDoConstrainDrawContourlinesEOCFDRFDR.pairedfdr1dfdr2dFDRpgauseilfdrlfdr.pairedMAsimMAsim.realMAsim.smythMAsim.varMidBreaksMidBreaks.tOCshowp0PermNullplot.FDR.resultplot.fdr1d.resultplot.fdr2d.resultRinvrmatrixsamplesizesmooth1dsmooth2d.basicsmooth2d.directsummary.fdr.resulttMixtureTOCtopDETornadoplottstatisticsVolcanoplot

Dependencies:BiobaseBiocGenericsdeldirgenericsinterplatticeMASSMatrixmulttestRcppRcppEigensurvival

OCplus Introduction

Rendered fromOCplus.Rnwusingutils::Sweaveon Jan 14 2025.

Last update: 2022-10-14
Started: 2013-11-01