Package: OCplus 1.87.0

Alexander Ploner

OCplus: Operating characteristics plus sample size and local fdr for microarray experiments

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Authors:Yudi Pawitan <[email protected]> and Alexander Ploner <[email protected]>

OCplus_1.87.0.tar.gz
OCplus_1.87.0.zip(r-4.7)OCplus_1.87.0.zip(r-4.6)OCplus_1.87.0.zip(r-4.5)
OCplus_1.87.0.tgz(r-4.6-any)OCplus_1.87.0.tgz(r-4.5-any)
OCplus_1.87.0.tar.gz(r-4.7-any)OCplus_1.87.0.tar.gz(r-4.6-any)
OCplus_1.87.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OCplus/json (API)

# Install 'OCplus' in R:
install.packages('OCplus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:OCplus-1.87.0(bioc 3.24)OCplus-1.86.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpressionmultiplecomparison

4.08 score 2 scripts 432 downloads 6 mentions 49 exports 12 dependencies

Last updated from:2b53caf23d. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR133
linux-devel-x86_64NOTE192
source / vignettesOK153
linux-release-x86_64NOTE140
macos-release-arm64NOTE235
macos-oldrel-arm64NOTE105
windows-develNOTE156
windows-releaseNOTE106
windows-oldrelNOTE118
wasm-releaseOK92

Exports:approx2daverage.fdrbrk2midCDFCDF.pairedCDFmixCDFmix.paireddf2vardgfreedmtdmt.paireddmtmixdmtmix.pairedDoConstrainDrawContourlinesEOCFDRFDR.pairedfdr1dfdr2dFDRpgauseilfdrlfdr.pairedMAsimMAsim.realMAsim.smythMAsim.varMidBreaksMidBreaks.tOCshowp0PermNullplot.FDR.resultplot.fdr1d.resultplot.fdr2d.resultRinvrmatrixsamplesizesmooth1dsmooth2d.basicsmooth2d.directsummary.fdr.resulttMixtureTOCtopDETornadoplottstatisticsVolcanoplot

Dependencies:BiobaseBiocGenericsdeldirgenericsinterplatticeMASSMatrixmulttestRcppRcppEigensurvival

OCplus Introduction

Rendered fromOCplus.Rnwusingutils::Sweaveon May 25 2026.

Last update: 2022-10-14
Started: 2013-11-01