Package: OCplus 1.81.0

Alexander Ploner

OCplus: Operating characteristics plus sample size and local fdr for microarray experiments

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Authors:Yudi Pawitan <[email protected]> and Alexander Ploner <[email protected]>

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OCplus.pdf |OCplus.html✨
OCplus/json (API)

# Install 'OCplus' in R:
install.packages('OCplus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:OCplus-1.81.0(bioc 3.21)OCplus-1.80.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpressionmultiplecomparison

4.08 score 2 scripts 334 downloads 6 mentions 49 exports 12 dependencies

Last updated 4 months agofrom:530dc282f7. Checks:3 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 13 2025
R-4.5-winNOTEFeb 13 2025
R-4.5-macNOTEFeb 13 2025
R-4.5-linuxNOTEFeb 13 2025
R-4.4-winNOTEFeb 13 2025
R-4.4-macNOTEFeb 13 2025
R-4.3-winOKFeb 13 2025
R-4.3-macOKFeb 13 2025

Exports:approx2daverage.fdrbrk2midCDFCDF.pairedCDFmixCDFmix.paireddf2vardgfreedmtdmt.paireddmtmixdmtmix.pairedDoConstrainDrawContourlinesEOCFDRFDR.pairedfdr1dfdr2dFDRpgauseilfdrlfdr.pairedMAsimMAsim.realMAsim.smythMAsim.varMidBreaksMidBreaks.tOCshowp0PermNullplot.FDR.resultplot.fdr1d.resultplot.fdr2d.resultRinvrmatrixsamplesizesmooth1dsmooth2d.basicsmooth2d.directsummary.fdr.resulttMixtureTOCtopDETornadoplottstatisticsVolcanoplot

Dependencies:BiobaseBiocGenericsdeldirgenericsinterplatticeMASSMatrixmulttestRcppRcppEigensurvival

OCplus Introduction

Rendered fromOCplus.Rnwusingutils::Sweaveon Feb 13 2025.

Last update: 2022-10-14
Started: 2013-11-01