Package: NTW 1.57.0

Yuanhua Liu

NTW: Predict gene network using an Ordinary Differential Equation (ODE) based method

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Authors:Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

NTW_1.57.0.tar.gz
NTW_1.57.0.zip(r-4.5)NTW_1.57.0.zip(r-4.4)NTW_1.57.0.zip(r-4.3)
NTW_1.57.0.tgz(r-4.4-any)NTW_1.57.0.tgz(r-4.3-any)
NTW_1.57.0.tar.gz(r-4.5-noble)NTW_1.57.0.tar.gz(r-4.4-noble)
NTW_1.57.0.tgz(r-4.4-emscripten)NTW_1.57.0.tgz(r-4.3-emscripten)
NTW.pdf |NTW.html✨
NTW/json (API)
NEWS

# Install 'NTW' in R:
install.packages('NTW', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • sos.data - SOS pathway perturbation data

On BioConductor:NTW-1.55.0(bioc 3.20)NTW-1.54.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

preprocessing

3.78 score 1 scripts 219 downloads 3 mentions 10 exports 1 dependencies

Last updated 23 days agofrom:1d0ba97d6f. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winWARNINGOct 30 2024
R-4.5-linuxWARNINGOct 30 2024
R-4.4-winWARNINGOct 30 2024
R-4.4-macWARNINGOct 30 2024
R-4.3-winWARNINGOct 30 2024
R-4.3-macWARNINGOct 30 2024

Exports:A.estimation.SrowAP.estimation.Srowbackwardcomb.matrixforwardmethod.geomethod.mlmethod.sseNTWP.preestimation

Dependencies:mvtnorm

NTW vignette

Rendered fromNTW.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2013-11-01
Started: 2013-11-01