Package: MultiBaC 1.23.0

The package maintainer

MultiBaC: Multiomic Batch effect Correction

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Authors:person, person, person

MultiBaC_1.23.0.tar.gz
MultiBaC_1.23.0.zip(r-4.7)MultiBaC_1.23.0.zip(r-4.6)MultiBaC_1.23.0.zip(r-4.5)
MultiBaC_1.23.0.tgz(r-4.6-any)MultiBaC_1.23.0.tgz(r-4.5-any)
MultiBaC_1.23.0.tar.gz(r-4.7-any)MultiBaC_1.23.0.tar.gz(r-4.6-any)
MultiBaC_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MultiBaC/json (API)

# Install 'MultiBaC' in R:
install.packages('MultiBaC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • A.gro - Transcription rate data from yeast
  • A.rna - Gene expression data from yeast
  • B.ribo - Gene translation rate data from yeast
  • B.rna - Gene expression data from yeast
  • C.par - Protein binded mRNA data from yeast
  • C.rna - Gene expression data from yeast

On BioConductor:MultiBaC-1.23.0(bioc 3.24)MultiBaC-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethodprincipalcomponentdatarepresentationgeneexpressiontranscriptionbatcheffect

3.30 score 7 scripts 440 downloads 12 exports 92 dependencies

Last updated from:b8f3d4e7d4. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE174
linux-devel-x86_64OK271
source / vignettesOK232
linux-release-x86_64OK278
macos-release-arm64OK139
macos-oldrel-arm64OK151
windows-develOK204
windows-releaseOK285
windows-oldrelOK199
wasm-releaseOK143

Exports:ARSyNbacbatchCorrectionbatchEstPlotcreateMbacexplained_varPlotgenMissingOmicsgenModelListinner_relPlotMultiBaCplot_pcaQ2_plotsummary.mbac

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemcalibrateclicpp11crosstalkcurldata.tableDelayedArraydigestdplyrevaluatefarverfastmapfontawesomefsgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetopensslotelpcaMethodspillarpkgconfigplotlyplotrixpromisespurrrqqmanR6rappdirsRColorBrewerRcpprlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXVectoryaml

MultiBaC user's guide

Manuel Ugidos, Sonia Tarazona, Maria J. Nueda

Rendered fromMultiBaC.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-10-26
Started: 2019-06-14