Package: MultiBaC 1.17.0
The package maintainer
MultiBaC: Multiomic Batch effect Correction
MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.
Authors:
MultiBaC_1.17.0.tar.gz
MultiBaC_1.17.0.zip(r-4.5)MultiBaC_1.17.0.zip(r-4.4)MultiBaC_1.17.0.zip(r-4.3)
MultiBaC_1.17.0.tgz(r-4.4-any)MultiBaC_1.17.0.tgz(r-4.3-any)
MultiBaC_1.17.0.tar.gz(r-4.5-noble)MultiBaC_1.17.0.tar.gz(r-4.4-noble)
MultiBaC_1.17.0.tgz(r-4.4-emscripten)MultiBaC_1.17.0.tgz(r-4.3-emscripten)
MultiBaC.pdf |MultiBaC.html✨
MultiBaC/json (API)
| # Install 'MultiBaC' in R: |
| install.packages('MultiBaC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MultiBaC-1.17.0(bioc 3.21)MultiBaC-1.16.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarestatisticalmethodprincipalcomponentdatarepresentationgeneexpressiontranscriptionbatcheffect
Last updated 2 months agofrom:032c958475. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | OK | Nov 29 2024 |
| R-4.5-linux | OK | Nov 29 2024 |
| R-4.4-win | OK | Nov 29 2024 |
| R-4.4-mac | OK | Nov 29 2024 |
| R-4.3-win | OK | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:ARSyNbacbatchCorrectionbatchEstPlotcreateMbacexplained_varPlotgenMissingOmicsgenModelListinner_relPlotMultiBaCplot_pcaQ2_plotsummary.mbac
Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemcalibrateclicolorspacecpp11crayoncrosstalkcurldata.tableDelayedArraydigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMultiAssayExperimentMultiDataSetmunsellnlmeopensslpcaMethodspillarpkgconfigplotlyplotrixpromisespurrrqqmanR6rappdirsRColorBrewerRcpprlangrmarkdownroplsS4ArraysS4VectorssassscalesSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Transcription rate data from yeast | A.gro |
| Gene expression data from yeast | A.rna |
| ARSyNbac | ARSyNbac |
| Gene translation rate data from yeast | B.ribo |
| Gene expression data from yeast | B.rna |
| batchCorrection | batchCorrection |
| batchEstPlot | batchEstPlot |
| Protein binded mRNA data from yeast | C.par |
| Gene expression data from yeast | C.rna |
| createMbac | createMbac |
| explained_varPlot | explained_varPlot |
| genMissingOmics | genMissingOmics |
| genModelList | genModelList |
| inner_relPLot | inner_relPlot |
| MultiBaC | MultiBaC-package MultiBaC |
| A distributed yeast multiomic dataset | multiyeast |
| plot_pca | plot_pca |
| Plot Method for mbac | plot,mbac-method plot.mbac |
| Q2_plot | Q2_plot |
| summary.mbac | summary.mbac |
