Introduction | Installation | MSP file format | Importing MS/MS data from MSP files | Session information | References
Package: MsBackendMsp 1.17.0
Johannes Rainer
MsBackendMsp: Mass Spectrometry Data Backend for NIST msp Files
Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.
Authors:
MsBackendMsp_1.17.0.tar.gz
MsBackendMsp_1.17.0.zip(r-4.7)MsBackendMsp_1.17.0.zip(r-4.6)MsBackendMsp_1.17.0.zip(r-4.5)
MsBackendMsp_1.17.0.tgz(r-4.6-any)MsBackendMsp_1.17.0.tgz(r-4.5-any)
MsBackendMsp_1.17.0.tar.gz(r-4.7-any)MsBackendMsp_1.17.0.tar.gz(r-4.6-any)
MsBackendMsp_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendMsp/json (API)
| # Install 'MsBackendMsp' in R: |
| install.packages('MsBackendMsp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/msbackendmsp/issues
On BioConductor:MsBackendMsp-1.17.0(bioc 3.24)MsBackendMsp-1.16.0(bioc 3.23)
infrastructureproteomicsmassspectrometrymetabolomicsdataimportmass-spectrometry
Last updated from:a29463c58a. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 173 | ||
| linux-devel-x86_64 | OK | 244 | ||
| source / vignettes | OK | 195 | ||
| linux-release-x86_64 | OK | 212 | ||
| macos-release-arm64 | OK | 107 | ||
| macos-oldrel-arm64 | OK | 106 | ||
| windows-devel | OK | 128 | ||
| windows-release | OK | 130 | ||
| windows-oldrel | OK | 145 | ||
| wasm-release | OK | 156 |
Exports:backendInitializeexportMsBackendMspreadMspspectraVariableMapping
Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11data.tableformatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| MS data backend for msp files | backendInitialize,MsBackendMsp-method export,MsBackendMsp-method MsBackendMsp MsBackendMsp-class spectraVariableMapping,MsBackendMsp-method |
| Reading MSP files | readMsp |
