Package: MsBackendMsp 1.11.1

Johannes Rainer

MsBackendMsp: Mass Spectrometry Data Backend for NIST msp Files

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Authors:Neumann Steffen [aut], Johannes Rainer [aut, cre], Michael Witting [ctb]

MsBackendMsp_1.11.1.tar.gz
MsBackendMsp_1.11.1.zip(r-4.5)MsBackendMsp_1.11.1.zip(r-4.4)MsBackendMsp_1.11.1.zip(r-4.3)
MsBackendMsp_1.11.1.tgz(r-4.4-any)MsBackendMsp_1.11.1.tgz(r-4.3-any)
MsBackendMsp_1.11.1.tar.gz(r-4.5-noble)MsBackendMsp_1.11.1.tar.gz(r-4.4-noble)
MsBackendMsp_1.11.1.tgz(r-4.4-emscripten)MsBackendMsp_1.11.1.tgz(r-4.3-emscripten)
MsBackendMsp.pdf |MsBackendMsp.html
MsBackendMsp/json (API)
NEWS

# Install 'MsBackendMsp' in R:
install.packages('MsBackendMsp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msbackendmsp/issues

On BioConductor:MsBackendMsp-1.11.0(bioc 3.21)MsBackendMsp-1.10.0(bioc 3.20)

infrastructureproteomicsmassspectrometrymetabolomicsdataimportmass-spectrometry

7.21 score 5 stars 3 packages 36 scripts 395 downloads 5 exports 22 dependencies

Last updated 2 days agofrom:75db3669c0. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 18 2025
R-4.5-winOKJan 18 2025
R-4.5-linuxOKJan 18 2025
R-4.4-winOKJan 18 2025
R-4.4-macOKJan 18 2025
R-4.3-winOKJan 18 2025
R-4.3-macOKJan 18 2025

Exports:backendInitializeexportMsBackendMspreadMspspectraVariableMapping

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11formatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra

MsBackendMsp

Rendered fromMsBackendMsp.Rmdusingknitr::rmarkdownon Jan 18 2025.

Last update: 2024-04-04
Started: 2022-02-02

Readme and manuals

Help Manual

Help pageTopics
MS data backend for msp filesbackendInitialize,MsBackendMsp-method export,MsBackendMsp-method MsBackendMsp MsBackendMsp-class spectraVariableMapping,MsBackendMsp-method
Reading MSP filesreadMsp