Package: MsBackendMsp 1.17.1

Johannes Rainer

MsBackendMsp: Mass Spectrometry Data Backend for NIST msp Files

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Authors:Neumann Steffen [aut], Johannes Rainer [aut, cre], Michael Witting [ctb]

MsBackendMsp_1.17.1.tar.gz
MsBackendMsp_1.17.1.zip(r-4.7-any)MsBackendMsp_1.17.1.zip(r-4.6-any)MsBackendMsp_1.17.1.zip(r-4.5-any)
MsBackendMsp_1.17.1.tgz(r-4.6-any)MsBackendMsp_1.17.1.tgz(r-4.5-any)
MsBackendMsp_1.17.1.tar.gz(r-4.7-any)MsBackendMsp_1.17.1.tar.gz(r-4.6-any)
MsBackendMsp_1.17.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendMsp/json (API)

# Install 'MsBackendMsp' in R:

install.packages('MsBackendMsp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmsp/issues

On BioConductor:MsBackendMsp-1.17.1(bioc 3.24)MsBackendMsp-1.16.0(bioc 3.23)

infrastructure proteomics massspectrometry metabolomics dataimport mass-spectrometry

6.89 score 5 stars 2 packages 43 scripts 886 downloads 6 exports 23 dependencies

Last updated from:32d130465c. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	183
linux-devel	NOTE	241
source / vignettes	OK	281
linux-release	NOTE	251
macos-release	NOTE	133
macos-oldrel	NOTE	119
windows-devel	NOTE	139
windows-release	NOTE	135
windows-oldrel	NOTE	133
wasm-release	OK	119

Exports:backendInitialize export MsBackendMsp MspSpectra readMsp spectraVariableMapping

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 data.table formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils ProtGenerics Rcpp S4Vectors snow Spectra

MsBackendMsp

Rendered fromMsBackendMsp.Rmdusingknitr::rmarkdown

Last update: 2024-04-04
Started: 2022-02-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
MS data backend for msp files	backendInitialize,MsBackendMsp-method export,MsBackendMsp-method MsBackendMsp MsBackendMsp-class MspSpectra spectraVariableMapping,MsBackendMsp-method
Reading MSP files	readMsp