Package: MsBackendMassbank 1.15.3

RforMassSpectrometry Package Maintainer

MsBackendMassbank: Mass Spectrometry Data Backend for MassBank record Files

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Authors:RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut], Johannes Rainer [aut], Michael Stravs [ctb]

MsBackendMassbank_1.15.3.tar.gz
MsBackendMassbank_1.15.3.zip(r-4.5)MsBackendMassbank_1.15.3.zip(r-4.4)MsBackendMassbank_1.15.3.zip(r-4.3)
MsBackendMassbank_1.15.3.tgz(r-4.5-any)MsBackendMassbank_1.15.3.tgz(r-4.4-any)MsBackendMassbank_1.15.3.tgz(r-4.3-any)
MsBackendMassbank_1.15.3.tar.gz(r-4.5-noble)MsBackendMassbank_1.15.3.tar.gz(r-4.4-noble)
MsBackendMassbank_1.15.3.tgz(r-4.4-emscripten)MsBackendMassbank_1.15.3.tgz(r-4.3-emscripten)
MsBackendMassbank.pdf |MsBackendMassbank.html✨
MsBackendMassbank/json (API)

# Install 'MsBackendMassbank' in R:
install.packages('MsBackendMassbank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmassbank/issues

On BioConductor:MsBackendMassbank-1.15.2(bioc 3.21)MsBackendMassbank-1.14.0(bioc 3.20)

infrastructuremassspectrometrymetabolomicsdataimportmassbankspectra

5.91 score 3 stars 27 scripts 243 downloads 18 exports 23 dependencies

Last updated 11 days agofrom:0349704a0c. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 27 2025
R-4.5-winNOTEFeb 27 2025
R-4.5-macNOTEFeb 27 2025
R-4.5-linuxNOTEFeb 27 2025
R-4.4-winNOTEFeb 27 2025
R-4.4-macNOTEFeb 27 2025
R-4.3-winNOTEFeb 27 2025
R-4.3-macNOTEFeb 27 2025

Exports:backendInitializecompoundsdataStorageexportextractByIndexintensity<-metaDataBlocksMsBackendMassbankMsBackendMassbankSqlmz<-peaksDataprecScanNumresetspectraDataspectraNamesspectraNames<-spectraVariableMappingtic

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11DBIformatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra

Description and usage of MsBackendMassbank

Rendered fromMsBackendMassbank.Rmdusingknitr::rmarkdownon Feb 27 2025.

Last update: 2023-03-14
Started: 2020-04-21

Readme and manuals

Help Manual

Help pageTopics
Metadata blocks to be readmetaDataBlocks
MS data backend for mgf filesbackendInitialize,MsBackendMassbank-method export,MsBackendMassbank-method MsBackendMassbank MsBackendMassbank-class spectraVariableMapping,MsBackendMassbank-method
MS backend accessing the MassBank MySQL database$<-,MsBackendMassbankSql-method backendBpparam,MsBackendMassbankSql-method backendInitialize,MsBackendMassbankSql-method compounds compounds,MsBackendMassbankSql-method compounds,Spectra-method dataStorage,MsBackendMassbankSql-method extractByIndex,MsBackendMassbankSql,ANY-method intensity<-,MsBackendMassbankSql-method MsBackendMassbankSql MsBackendMassbankSql-class mz<-,MsBackendMassbankSql-method peaksData,MsBackendMassbankSql-method precScanNum,MsBackendMassbankSql-method reset,MsBackendMassbankSql-method spectraData,MsBackendMassbankSql-method spectraNames,MsBackendMassbankSql-method spectraNames<-,MsBackendMassbankSql-method tic,MsBackendMassbankSql-method [,MsBackendMassbankSql-method