Package: MsBackendMassbank 1.13.0

RforMassSpectrometry Package Maintainer

MsBackendMassbank: Mass Spectrometry Data Backend for MassBank record Files

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Authors:RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut], Johannes Rainer [aut], Michael Stravs [ctb]

MsBackendMassbank_1.13.0.tar.gz
MsBackendMassbank_1.13.0.zip(r-4.5)MsBackendMassbank_1.13.0.zip(r-4.4)MsBackendMassbank_1.13.0.zip(r-4.3)
MsBackendMassbank_1.13.0.tgz(r-4.4-any)MsBackendMassbank_1.13.0.tgz(r-4.3-any)
MsBackendMassbank_1.13.0.tar.gz(r-4.5-noble)MsBackendMassbank_1.13.0.tar.gz(r-4.4-noble)
MsBackendMassbank_1.13.0.tgz(r-4.4-emscripten)MsBackendMassbank_1.13.0.tgz(r-4.3-emscripten)
MsBackendMassbank.pdf |MsBackendMassbank.html✨
MsBackendMassbank/json (API)

# Install 'MsBackendMassbank' in R:
install.packages('MsBackendMassbank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msbackendmassbank/issues

On BioConductor:MsBackendMassbank-1.13.0(bioc 3.20)MsBackendMassbank-1.12.0(bioc 3.19)

bioconductor-package

17 exports 0.82 score 22 dependencies

Last updated 2 months agofrom:a55a38983e

Exports:backendInitializecompoundsdataStorageexportintensity<-metaDataBlocksMsBackendMassbankMsBackendMassbankSqlmz<-peaksDataprecScanNumresetspectraDataspectraNamesspectraNames<-spectraVariableMappingtic

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11DBIformatRfsfutile.loggerfutile.optionsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra

Description and usage of MsBackendMassbank

Rendered fromMsBackendMassbank.Rmdusingknitr::rmarkdownon Jun 13 2024.

Last update: 2023-03-14
Started: 2020-04-21

Readme and manuals

Help Manual

Help pageTopics
Metadata blocks to be readmetaDataBlocks
MS data backend for mgf filesbackendInitialize,MsBackendMassbank-method export,MsBackendMassbank-method MsBackendMassbank MsBackendMassbank-class spectraVariableMapping,MsBackendMassbank-method
MS backend accessing the MassBank MySQL database$<-,MsBackendMassbankSql-method backendBpparam,MsBackendMassbankSql-method backendInitialize,MsBackendMassbankSql-method compounds compounds,MsBackendMassbankSql-method compounds,Spectra-method dataStorage,MsBackendMassbankSql-method intensity<-,MsBackendMassbankSql-method MsBackendMassbankSql MsBackendMassbankSql-class mz<-,MsBackendMassbankSql-method peaksData,MsBackendMassbankSql-method precScanNum,MsBackendMassbankSql-method reset,MsBackendMassbankSql-method spectraData,MsBackendMassbankSql-method spectraNames,MsBackendMassbankSql-method spectraNames<-,MsBackendMassbankSql-method tic,MsBackendMassbankSql-method [,MsBackendMassbankSql-method