Package: MsBackendMassbank 1.15.0

RforMassSpectrometry Package Maintainer

MsBackendMassbank: Mass Spectrometry Data Backend for MassBank record Files

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Authors:RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut], Johannes Rainer [aut], Michael Stravs [ctb]

MsBackendMassbank_1.15.0.tar.gz
MsBackendMassbank_1.15.0.zip(r-4.5)MsBackendMassbank_1.15.0.zip(r-4.4)MsBackendMassbank_1.15.0.zip(r-4.3)
MsBackendMassbank_1.15.0.tgz(r-4.4-any)MsBackendMassbank_1.15.0.tgz(r-4.3-any)
MsBackendMassbank_1.15.0.tar.gz(r-4.5-noble)MsBackendMassbank_1.15.0.tar.gz(r-4.4-noble)
MsBackendMassbank_1.15.0.tgz(r-4.4-emscripten)MsBackendMassbank_1.15.0.tgz(r-4.3-emscripten)
MsBackendMassbank.pdf |MsBackendMassbank.html✨
MsBackendMassbank/json (API)

# Install 'MsBackendMassbank' in R:
install.packages('MsBackendMassbank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msbackendmassbank/issues

On BioConductor:MsBackendMassbank-1.13.1(bioc 3.20)MsBackendMassbank-1.12.0(bioc 3.19)

infrastructuremassspectrometrymetabolomicsdataimportmassbankspectra

5.84 score 3 stars 23 scripts 206 downloads 18 exports 22 dependencies

Last updated 18 days agofrom:98147f53e7. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:backendInitializecompoundsdataStorageexportextractByIndexintensity<-metaDataBlocksMsBackendMassbankMsBackendMassbankSqlmz<-peaksDataprecScanNumresetspectraDataspectraNamesspectraNames<-spectraVariableMappingtic

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11DBIformatRfsfutile.loggerfutile.optionsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra

Description and usage of MsBackendMassbank

Rendered fromMsBackendMassbank.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2023-03-14
Started: 2020-04-21

Readme and manuals

Help Manual

Help pageTopics
Metadata blocks to be readmetaDataBlocks
MS data backend for mgf filesbackendInitialize,MsBackendMassbank-method export,MsBackendMassbank-method MsBackendMassbank MsBackendMassbank-class spectraVariableMapping,MsBackendMassbank-method
MS backend accessing the MassBank MySQL database$<-,MsBackendMassbankSql-method backendBpparam,MsBackendMassbankSql-method backendInitialize,MsBackendMassbankSql-method compounds compounds,MsBackendMassbankSql-method compounds,Spectra-method dataStorage,MsBackendMassbankSql-method extractByIndex,MsBackendMassbankSql,ANY-method intensity<-,MsBackendMassbankSql-method MsBackendMassbankSql MsBackendMassbankSql-class mz<-,MsBackendMassbankSql-method peaksData,MsBackendMassbankSql-method precScanNum,MsBackendMassbankSql-method reset,MsBackendMassbankSql-method spectraData,MsBackendMassbankSql-method spectraNames,MsBackendMassbankSql-method spectraNames<-,MsBackendMassbankSql-method tic,MsBackendMassbankSql-method [,MsBackendMassbankSql-method