Package: MiChip 1.61.0
Jonathon Blake
MiChip: MiChip Parsing and Summarizing Functions
This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.
Authors:
MiChip_1.61.0.tar.gz
MiChip_1.61.0.zip(r-4.5)MiChip_1.61.0.zip(r-4.4)MiChip_1.61.0.zip(r-4.3)
MiChip_1.61.0.tgz(r-4.4-any)MiChip_1.61.0.tgz(r-4.3-any)
MiChip_1.61.0.tar.gz(r-4.5-noble)MiChip_1.61.0.tar.gz(r-4.4-noble)
MiChip_1.61.0.tgz(r-4.4-emscripten)MiChip_1.61.0.tgz(r-4.3-emscripten)
MiChip.pdf |MiChip.html✨
MiChip/json (API)
| # Install 'MiChip' in R: |
| install.packages('MiChip', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MiChip-1.61.0(bioc 3.21)MiChip-1.60.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:8c80304157. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 07 2024 |
| R-4.5-win | NOTE | Dec 07 2024 |
| R-4.5-linux | NOTE | Dec 07 2024 |
| R-4.4-win | NOTE | Dec 07 2024 |
| R-4.4-mac | NOTE | Dec 07 2024 |
| R-4.3-win | NOTE | Dec 07 2024 |
| R-4.3-mac | NOTE | Dec 07 2024 |
Exports:boxplotDataboxplotDataNoFilecorrectForFlagsmyForgivingMediannormalizePerChipMedianoutputAnnotatedDataMatrixparseRawDataplotIntensitiesScatterremoveUnwantedRowsreturnAnnotatedDataMatrixsetIntensityCutoffstandardRemoveRowssummarizeIntensitiesAsMedianworkedExampleMedianNormalizeworkedExampleNotNormalizedData
Dependencies:BiobaseBiocGenericsgenerics
