Package: MiChip 1.67.0

Jonathon Blake

MiChip: MiChip Parsing and Summarizing Functions

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Authors:Jonathon Blake <[email protected]>

MiChip_1.67.0.tar.gz
MiChip_1.67.0.zip(r-4.7)MiChip_1.67.0.zip(r-4.6)MiChip_1.67.0.zip(r-4.5)
MiChip_1.67.0.tgz(r-4.6-any)MiChip_1.67.0.tgz(r-4.5-any)
MiChip_1.67.0.tar.gz(r-4.7-any)MiChip_1.67.0.tar.gz(r-4.6-any)
MiChip_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MiChip/json (API)

# Install 'MiChip' in R:
install.packages('MiChip', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MiChip-1.67.0(bioc 3.24)MiChip-1.66.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraypreprocessing

3.30 score 6 scripts 406 downloads 15 exports 3 dependencies

Last updated from:7fa0938648. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR139
linux-devel-x86_64NOTE172
source / vignettesOK138
linux-release-x86_64NOTE171
macos-release-arm64NOTE105
macos-oldrel-arm64NOTE93
windows-develNOTE76
windows-releaseNOTE82
windows-oldrelNOTE61
wasm-releaseOK89

Exports:boxplotDataboxplotDataNoFilecorrectForFlagsmyForgivingMediannormalizePerChipMedianoutputAnnotatedDataMatrixparseRawDataplotIntensitiesScatterremoveUnwantedRowsreturnAnnotatedDataMatrixsetIntensityCutoffstandardRemoveRowssummarizeIntensitiesAsMedianworkedExampleMedianNormalizeworkedExampleNotNormalizedData

Dependencies:BiobaseBiocGenericsgenerics

MiChip miRNA Microarray Processing

Rendered fromMiChip.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2013-11-01
Started: 2013-11-01