Introduction | Reading the Hybridization Files | Removing Unwanted Rows and Correcting for Flags | Summarizing Intensities | Plotting Functions | Normalization | Writing Output Files | Combination of processes
Package: MiChip 1.67.0
Jonathon Blake
MiChip: MiChip Parsing and Summarizing Functions
This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.
Authors:
MiChip_1.67.0.tar.gz
MiChip_1.67.0.zip(r-4.7)MiChip_1.67.0.zip(r-4.6)MiChip_1.67.0.zip(r-4.5)
MiChip_1.67.0.tgz(r-4.6-any)MiChip_1.67.0.tgz(r-4.5-any)
MiChip_1.67.0.tar.gz(r-4.7-any)MiChip_1.67.0.tar.gz(r-4.6-any)
MiChip_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MiChip/json (API)
| # Install 'MiChip' in R: |
| install.packages('MiChip', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MiChip-1.67.0(bioc 3.24)MiChip-1.66.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7fa0938648. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 146 | ||
| linux-devel-x86_64 | NOTE | 176 | ||
| source / vignettes | OK | 181 | ||
| linux-release-x86_64 | NOTE | 172 | ||
| macos-release-arm64 | NOTE | 85 | ||
| macos-oldrel-arm64 | NOTE | 94 | ||
| windows-devel | NOTE | 69 | ||
| windows-release | NOTE | 68 | ||
| windows-oldrel | NOTE | 88 | ||
| wasm-release | OK | 89 |
Exports:boxplotDataboxplotDataNoFilecorrectForFlagsmyForgivingMediannormalizePerChipMedianoutputAnnotatedDataMatrixparseRawDataplotIntensitiesScatterremoveUnwantedRowsreturnAnnotatedDataMatrixsetIntensityCutoffstandardRemoveRowssummarizeIntensitiesAsMedianworkedExampleMedianNormalizeworkedExampleNotNormalizedData
Dependencies:BiobaseBiocGenericsgenerics
